Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq66438 237 1e-57 seq128143 187 2e-42 seq128971 100 2e-16 >seq66438 Length=2923 Score = 237 bits (262), Expect = 1e-57 Identities = 451/659 (68%), Gaps = 23/659 (3%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| | |||||| |||||| | | |||||| | | ||||| | | Sbjct 1588 GCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGATTGGGTA-CG 1530 Query 43817 TTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 | | | |||| ||| ||||| |||| ||||| || || || || || ||| Sbjct 1529 TCTTACCGACAATGAACGTCATTTCGTATCACACGTTTTAGCTTTCTTCGCCGCCTCCGA 1470 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA-TTACCAGAAG 43934 || || || ||||||||| | ||| || || |||||||| ||| ||||| |||| Sbjct 1469 TGGTATTGTTAATGAAAATCTAGTTGAACGTTTCAGTCAAGAAGTACAAATTACC-GAAG 1411 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||| || |||||||| |||||||| || || |||||| | ||||| |||||||| || Sbjct 1410 CACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAAATGTATAGCA 1351 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 |||| || ||||| ||||| || ||||| || | | |||||||| || | Sbjct 1350 TTCTTATTGATACCTACATTAAGGATGG-------AA------ANTATTTAATGCTATTG 1304 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 |||| | ||||| |||| | ||| || || ||||| || |||||| ||||| | Sbjct 1303 AAACGATCCCTGCCGTTAAGCGTAAGGCTGATTGGGCACTAGCATGGATCTCATCAAAAG 1244 Query 44115 ATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 || ||||| ||||| | | || ||||| | || |||||||| |||||| | Sbjct 1243 CGGCTAATTTTGGTGAACGTGTCATTGCATTTGCTGCCGTTGAAGGCATATTCTTTAGCG 1184 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | ||||| | || |||||||| || ||||| ||| | ||||| || ||||| || | Sbjct 1183 GTAGTTTTGCTTCGATCTTTTGGTTGAAAAAACGTGGTCTAATGCCCGGCTTGACATTCT 1124 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTG 44291 | |||||| |||| ||||||||||| |||||||| ||||||||||| || | | Sbjct 1123 CCAATGAGCTAATCTCGCGTGATGAAGGTTTACATTGTGATTTTGCTTGTCTGATGTTCC 1064 Query 44292 GATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAG 44351 | || | | | | ||||| | || |||| || || ||| ||||| | Sbjct 1063 AACATTTGGTA---CAGAAGCCGAGTAGGGAGCGTATTATTGAAATCATTGCTGAGGCGG 1007 Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410 | || || ||||||||||| | ||| || || || || ||||| || || |||||| Sbjct 1006 TTAAAATTGAACAAGAATTCTTAACAGATGCTTTGCCAGTGAATTTGATTGGCATGAAT 948 >seq128143 Length=5596 Score = 187 bits (206), Expect = 2e-42 Identities = 384/568 (68%), Gaps = 16/568 (3%) Strand=Plus/Minus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || ||||| ||| | ||||| |||||||| ||||| | ||| ||||| ||| |||||||| Sbjct 1594 GAGGAAGGCGATTTAGGTCCAGTTTATGGTTTTCAATGGCGTCATTTCGGATCAAAATAT 1535 Query 40920 GACACTATGTACTCTGATTA-TACCAA--TAAAGGAATGGATCAATTACAGTGCGTTATA 40976 |||| | | ||| | ||| || | | || || |||||| || ||||| Sbjct 1534 CGCACT---TGCAAGGATAACTACAAAGGTGAGGGCATAGATCAACTAACACAAGTTATT 1478 Query 40977 GATACGATTAAATCCG-----ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACC 41031 ||||| |||||| |||| || ||||| || ||| ||| || ||||| | Sbjct 1477 GATAC-----AATCCGTAATAATCCAAATGATCGACGCATCATAATGTCTGCATGGAATC 1423 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 | || ||| |||||||| ||||| ||||||| | || |||| |||| Sbjct 1422 CTGTTGATATACCACAAATGGCATTACCACCATGTCATTGTCTGGCGCAATTTTTCGTTG 1363 Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151 ||| ||||| || ||||||||||| || ||| | | || ||||| | || || | Sbjct 1362 CCAACGGTGAGCTATCATGTCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGC 1303 Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211 | || || || || ||||||||||| || || ||||||||||| | || | Sbjct 1302 CATTCAATATTGCTTCCTATGCTCTGCTTACTTACATGATTGCACATATAACAGGACTTC 1243 Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 ||||| || |||||||| || || || ||| ||| | || | | |||||| |||| Sbjct 1242 GGCCTGGAGACTTTGTTCATACTTTGGGCGATACGCATGTCTATAAAAGTCACATTGAGC 1183 Query 41272 CGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCG 41331 | | | |||||| | |||||| || | ||||| || | ||| |||||| || | Sbjct 1182 CACTGAAGGAACAATTATTACGAAAGCCACGCCCATTCCCGAAACTAACTATTAAGCGAG 1123 Query 41332 CTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGT 41391 ||| |||| ||||| |||||| |||||||||||| || || ||||| |||| Sbjct 1122 ATGTGAAAAATATTGAAGATTTTAAATTCGATGATTTTGAAATTGTTGACTACAAACCGT 1063 Query 41392 ACCCTAAAATCCACATGGACATGTCTGT 41419 | |||||||| |||||| ||| |||| Sbjct 1062 ATCCTAAAATAGCCATGGAAATGGCTGT 1035 >seq128971 Length=1653 Score = 100 bits (110), Expect = 2e-16 Identities = 186/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 |||||| || ||||| | |||||| | || || || || || | | ||||||| | Sbjct 728 TTTGCATATAATAATTTTCGATGAAATCGATGCTATTTGCAAAGCACGTGGTTCTGTAGC 669 Query 19608 A------AATGGAGTACATGACACTGTTGTCAATCAACTCCT-GTCAAAATTAGACGGTG 19660 | ||| || || || || || ||||||||| | | | ||||||| || |||| Sbjct 668 CGGCAATAGTGGTGTTCACGATACAGTGGTCAATCAATTGTTAGCCAAAATT-GATGGTG 610 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 || | ||| |||| || ||| | ||||||||||||||||| || | || | || || Sbjct 609 TTGAACAATTGAACAACATTCTGGTTATTGGCATGACTAACAGGCGTGATATGATTGATG 550 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAAT 19780 || ||||| ||||| ||||| || || | | || ||||||| ||||| ||||| Sbjct 549 AAGCTTTATTGCGACCTGGTCGCTTAGAGGTGCAAATGGAAATTAGTTTACCAAATGAAG 490 Query 19781 GTGGACGTGTGGAAATTTTAAACATACATAC 19811 || ||||| |||| || || || || || Sbjct 489 AAGGGCGTGTACAAATATTGAATATCCACAC 459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || || ||| ||| || ||| || ||| || || |||| |||| ||||| || Sbjct 1162 ATCGGTGGTTTGGATAACGAATTTAATGCAATTTTCCGACGAGCTTTTGCATCGCGCGTC 1103 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | |||| | | ||||| | || || ||||| ||| || | || | ||| Sbjct 1102 TTTCCACCAGAACTTGTCGAACAACTTGGTTGCAAACACGTTAAGGGTATACTGTTATAT 1043 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAA---ATTACTTACA 19419 |||||||| ||| ||| ||||| |||| || || || | |||| ||| | || Sbjct 1042 GGGCCACCTGGTACTGGTAAAACCCTAATGGCCCGACAAATCGGTAACATGTTAAATGCA 983 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 || || || ||||| |||||||| |||| || |||||||||| || |||| Sbjct 982 CGTGAA---CCGAAGATTGTTAATGGTCCACAAATTTTGGATAAATATGTGGGCGAATCT 926 Query 19480 GAAGAAAATGTACGACGTTTGTTTGC 19505 |||| |||||||| ||| | ||||| Sbjct 925 GAAGCCAATGTACGGCGTCTATTTGC 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396568119936475