Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq114852 327 1e-84 seq157162 107 2e-18 >seq114852 Length=3422 Score = 327 bits (362), Expect = 1e-84 Identities = 1036/1582 (65%), Gaps = 43/1582 (3%) Strand=Plus/Plus Query 130399 GCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATA 130458 || ||| || || || || ||||| || ||||| | || || ||||| || |||||||| Sbjct 819 GCGACTTTTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATA 878 Query 130459 CATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGG- 130516 |||||| |||||||| || ||| ||| || ||| || | || | ||||| Sbjct 879 CATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAA---GTTTGCC 935 Query 130517 -TAATTGGGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCC 130573 || || |||| || || |||||| | | |||||| |||||||||||| ||||| Sbjct 936 ATAGTTTGGTTCAGCTACATGAATAT--TAAACGATTGGCTTTGATCAATAAATGCGCCA 993 Query 130574 CTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTAT 130630 | || || ||||| | ||| || | ||| | |||||||| | |||||||| Sbjct 994 CGATCGGCTGCCATCTT---CATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAA 1050 Query 130631 AGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATA 130690 || || | || | || ||||| |||| ||| | ||| ||| |||| Sbjct 1051 AGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATA 1110 Query 130691 ATTTCGTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGA 130750 |||| | ||| | ||| |||| || | | |||||| || ||||||| Sbjct 1111 ATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACAAATGA 1170 Query 130751 TTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAAC 130810 | ||||| | |||||| ||||| | || ||||| | | ||||| || || | Sbjct 1171 TGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAA 1230 Query 130811 GGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCC 130870 |||||||| ||||| |||||||| | ||||| || || | ||| || |||||| |||| Sbjct 1231 GGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCC 1290 Query 130871 ACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCC 130930 | | || || || || | || ||| | | ||||| |||||| || ||| ||| Sbjct 1291 AAAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCC 1350 Query 130931 CATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCG 130990 |||||| ||| ||||| || |||||||||||| |||| ||||| ||||| || | Sbjct 1351 CATAGATCGGTTGGTTTT---TTATTCCACATATCATATTGGAGTATACCTTTGCTAACA 1407 Query 130991 GGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCC 131050 || | |||| | | ||| || | || | ||||| || ||||||||| Sbjct 1408 GGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCC 1467 Query 131051 AAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTC 131110 || || || || || || |||||| |||||||| ||| || || || || | |||| Sbjct 1468 AATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTC 1527 Query 131111 TCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACC 131170 ||||| || | ||| | || ||||| ||||| | ||| |||| |||| || | Sbjct 1528 TCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATG 1587 Query 131171 GGTCTATGTTTTAAATTACATTTACGCGAACATTCGG---TGGGATAAAGGTTAATGTCA 131227 || | |||| | || || |||| | ||||| |||||| | || | || Sbjct 1588 GGGCGATGTCTGAAGTTTGATTT---CTTTGTTTCGGGCAATGGATAATGATTCACTTCG 1644 Query 131228 ATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCA 131287 || ||||| |||| ||| ||| ||| | | || || ||| || | |||||| Sbjct 1645 ATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCG 1704 Query 131288 AACGTGCCAGTTTCGAGGTTTACAAATTGATTTA-CACATATTGACGCCAGATTACAAAC 131346 | || | ||||| | | ||||| ||||| | || || || || | ||||||||| Sbjct 1705 TA--TGAC-TTTTCGGGTGTAACAAACATATTTAGCGCA-ATCGATGCTAAATTACAAAC 1760 Query 131347 TGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTAT 131406 || ||| || | |||||| ||||||||| | ||| |||||||| | || || Sbjct 1761 AGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAAT 1820 Query 131407 GGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGG 131465 |||||| | |||||||||||| || || ||| ||||| |||||||||| |||||| | Sbjct 1821 GGTGCCAACATTTTGTTGATTACTCTTCCGATT-ACATGCATCCTTGTACAGCATGTATG 1879 Query 131466 GCGTGCCCGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAA 131523 | ||||| || || ||||| | ||||||||| | | ||||| ||| | || || Sbjct 1880 GTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAAGACTTT--GTGCTTTCAC 1937 Query 131524 T-TGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGC 131582 | | |||| | | || || || || || || || ||| || | | | Sbjct 1938 TGTCTTATTAG-CGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCAC 1996 Query 131583 CAAACGAACT-GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTC 131641 | | | || | || | ||||| | | || ||||| |||||||| | | || Sbjct 1997 CCCA-TACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTA 2055 Query 131642 TGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCT 131701 |||||| || |||||||| | ||| || | |||||| || || || | ||||||||| Sbjct 2056 GCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCA 2115 Query 131702 TTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGC 131761 | ||||| | || | |||| || |||| ||||| || || | || |||||| Sbjct 2116 CGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAATACATCTGCATGC 2175 Query 131762 CAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGA 131818 || ||||| ||||| | ||| | ||||| || || |||||| |||| |||| | Sbjct 2176 CATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAA 2235 Query 131819 CGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTG 131878 || ||| || ||| |||| | |||||| || ||||||| || | | ||||| || Sbjct 2236 CGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTA 2295 Query 131879 CTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCG 131938 | ||| |||| | || | || || || |||||||||||||| || | Sbjct 2296 CCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTGAGTCCAATACCACCAGCT 2355 Query 131939 TATTTAGAGATTAGTGCGCATT 131960 |||| || |||| ||| |||| Sbjct 2356 GATTTGGAAATTAATGCACATT 2377 >seq157162 Length=2207 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||||||||| | || || || ||||| |||||||||||| | | || | Sbjct 603 CGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGATAGAGTACGTCCA 544 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| |||||| |||| ||||| |||||||| || || | ||| |||||| Sbjct 543 TCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGGATACCTTCTTTA 484 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || || || ||| | |||| | ||||| | |||| || || || | ||| || Sbjct 483 TCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGC-TCGACCTCCAAAGTGAT 425 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || ||||| || || |||||||| Sbjct 424 GGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423985135724040