Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq114852 122 1e-22 >seq114852 Length=3422 Score = 122 bits (134), Expect = 1e-22 Identities = 306/463 (66%), Gaps = 4/463 (1%) Strand=Plus/Plus Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || || ||||| ||||| |||||||| |||||| ||| ||||| | |||| Sbjct 1735 AGCGCAATCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATT 1794 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 ||||| ||||| || || ||||| || || | ||| | ||| ||||||||| || Sbjct 1795 TCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTA 1854 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || ||||||||||| |||||||| || || || ||||| || |||| | |||||| Sbjct 1855 CATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCA 1914 Query 111413 TTCCAAACATCGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 ||||| | ||| | || || | || || |||||||| ||| || || | Sbjct 1915 AACCAAAGACTTTGTGCT--TTCACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAG 1972 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 | || | ||| ||||| |||||| | || ||||| || ||||| || | Sbjct 1973 TATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGC 2032 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | || ||||| | || | ||||| || ||||| ||||| ||||| ||||| | Sbjct 2033 ACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATA 2092 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | |||| | ||||||| ||| ||||| | || ||| ||| || | Sbjct 2093 AAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCA 2152 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||||| | | ||| || |||||||| || | ||||| ||| Sbjct 2153 AAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGC 2195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626593060932000