Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq114852 107 2e-18 seq96136 86.0 8e-12 >seq114852 Length=3422 Score = 107 bits (118), Expect = 2e-18 Identities = 596/940 (63%), Gaps = 29/940 (3%) Strand=Plus/Plus Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 ||| | ||| ||||| ||| ||||||| || ||| | ||| ||||| | || Sbjct 1167 ATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGT 1226 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 || || ||||| | |||||||| |||| ||||| || || || || || |||||||| Sbjct 1227 ATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGG 1286 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 ||||| || | | ||| || | || | | | | || || || | | ||| Sbjct 1287 TGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCA 1346 Query 118316 GTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 ||| | | || | ||| | | |||||||||| | ||||| ||||||| | Sbjct 1347 GTCCCA-TAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAA 1405 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || || || || |||| ||||| | || | || |||||||| | || || | Sbjct 1406 CAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTT 1465 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT---TGCCTTGGCCTCGT 118491 | | || | | ||||||||||| ||||| | ||||| ||| |||| | Sbjct 1466 CCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCA---GCCTGCT 1522 Query 118492 CGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 || || | | | || || || || || |||| || | |||||| || || | Sbjct 1523 CGCTCTCGTATGGGTAACG-CATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATA 1581 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTC 118607 || || ||||||||||| | || || ||| | | || || |||||| |||| Sbjct 1582 CCGATGGGGCGATGTCTGAAGTTTGATTTCTTTG---TTTCGGGCAATGGATAATGATTC 1638 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG-AAGCTTTTC 118666 ||||||| |||||||||| || || ||| || | ||| | |||| ||| Sbjct 1639 ACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTT- 1697 Query 118667 GTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | |||| | ||| | || | ||| || || || || || || || | | Sbjct 1698 GAAATCGTATGACT-----TTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAAA 1752 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 ||||| |||| |||||| | | ||||| | |||||| ||||| || || | Sbjct 1753 TTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTA 1812 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 | ||||||||||| | || | |||||| ||| ||||| ||||||||||| ||| Sbjct 1813 CATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGC 1872 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC--AGACATCGGCAG 118902 |||||||| || || ||||| ||| || | | |||||| || |||| | | | Sbjct 1873 ATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAAGACTTTG--TG 1930 Query 118903 CTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962 || ||| || || || || ||||||| ||| || || || || | ||| |||| Sbjct 1931 CTTTCACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACT 1990 Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022 | |||||| |||| || || || ||| | ||||| | || ||||| | Sbjct 1991 CATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTT 2050 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 || | ||||| || ||||| || || ||||| ||||| Sbjct 2051 CATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCA 2090 >seq96136 Length=5821 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||| || ||||| |||||||| || |||||||||| ||| || || | ||||||||| Sbjct 5316 ATCCTTTCCACCTTGCAGACGCGTACCGAATTGACCACGTGGTTCTAGTAAATTGATATT 5257 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 179183 ||||||||| | || | | || || || ||||| ||| || || | |||||| Sbjct 5256 GTTTGAACCAACATAATTTTGCGCTAAATTAACAATTGTAGATTGTAGTGACATTTCACC 5197 Query 179184 GTGATGGTAAGCCGACTTGTCCGCCAC 179210 |||||| || || ||| | || ||||| Sbjct 5196 GTGATGATAGGCAGACATTTCAGCCAC 5170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617018249000200