Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq182963 105 8e-18 seq114852 98.7 1e-15 >seq182963 Length=2454 Score = 105 bits (116), Expect = 8e-18 Identities = 279/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 9479 ATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCT 9538 |||| ||||| || |||||| ||| || | || | | ||| || |||||||| Sbjct 1979 ATCTGTTCGCGACCACGAACATCTGGCAGGCCAACAACAACTTGACGGTCGAAGCGACCC 2038 Query 9539 GGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATA 9598 ||||| | ||||| || || | ||| || || ||||| || || |||| || Sbjct 2039 GGACGCAATAGCGCCGGGTCCAGAACATCCGGACGGTTAGTCGCTGCAATAACAATGATG 2098 Query 9599 CCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCC 9655 ||| |||||| |||||||| ||||| || || | |||||| | || || || Sbjct 2099 CCT---TCATTACCTTCAAAACCGTCCATATCAACTAACATTTGGTTCAGTGTCTGCTCA 2155 Query 9656 CGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9713 || ||||||| | | | | | ||| |||| ||||| || || ||||| || | Sbjct 2156 CGCTCATCATGACCACCGCCCAA--ACCTGCACCCCGTTGACGACCTACAGCATCGATTT 2213 Query 9714 CATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC 9771 ||||||| || | ||||||||| || |||| | | |||||| | ||| ||||| Sbjct 2214 CATCAATAAAAATGATGCATGGGGCTGCTTTTTTTGCCTG--TTCAAACATATCACGTAC 2271 Query 9772 ACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGA 9830 || || ||||||||||||||||| || ||||| | | ||||| || | | | Sbjct 2272 GCGAGATGCACCCACACCAACAAACATTTCGACAAAATCAGAACCGGAA-ATAGTAAAAA 2330 Query 9831 AGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || |||| |||||| ||||| || || || || || || || ||||| || Sbjct 2331 AAGGCACTTTAGCTTCACCAGCAATAGCCTTTGCCAGCAGTGTTTTGCCTGTACCCGG 2388 >seq114852 Length=3422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 239/362 (66%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 104711 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 104770 ||| | ||||| |||||||| || ||||| | ||||| | | || ||||||| || Sbjct 2096 GCTTTATGGATACCAGATCTTTTTATGAAACGTGTTGAAGCTAATGAAGATTGGTCGCTG 2037 Query 104771 TTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTT 104830 | || || ||||| |||||||| || | |||||| ||||| ||| | Sbjct 2036 ATGTGCCCTCACAAGTGTCCTGGTCTGCATGAGGTATGGGGTGATGAGTTCGAACAATTA 1977 Query 104831 TACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG 104890 || || || || ||| |||| || || || | | ||| ||| ||| | | ||| Sbjct 1976 TATACTAAATATGAGCAAGAGGGACGCGCTAATAAGACAGTGAAAGCACAAAGTCTTTGG 1917 Query 104891 AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCC 104950 |||||| | | || ||| ||||| || |||||||||||||| ||||| || || Sbjct 1916 TTTGCTATTATTGAATCGCAAGTAGAGACCGGCACACCATACATGCTGTACAAGGATGCA 1857 Query 104951 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACA 105010 ||||| | |||||||||||| | ||| | || || || || ||| | || ||| Sbjct 1856 TGTAATCGGAAGAGTAATCAACAAAATGTTGGCACCATTAAATGTAGTAATTTATGCACA 1797 Query 105011 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCT 105070 ||||| | || | | ||| ||||| ||||| ||||| | ||||| || || Sbjct 1796 GAAATTGTTGAGTATTCAGCACCGGATGAAGTAGCTGTTTGTAATTTAGCATCGATTGCG 1737 Query 105071 CT 105072 || Sbjct 1736 CT 1735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581924440145800