Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq128143 93.3 3e-14 seq183157 86.0 5e-12 >seq128143 Length=5596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 194/288 (67%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 111654 TCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGT----- 111708 ||| ||||| ||||||| || || ||| |||||||| ||| ||||||| Sbjct 1124 TCGCTTAATAGTTAGTTTCGGGAATGGGCGTGGCTTTCG--TAA----TAATTGTTCCTT 1177 Query 111709 -AAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCA 111767 | |||| |||||| || ||| ||||||| ||| || | | ||| | || || | Sbjct 1178 CAGTGGCTCAATGTGACTTTTATAGACATGCGTATCGCCCAAAGTATGAACAAAGTCTCC 1237 Query 111768 AGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTT 111827 |||| | || || || |||||||||||||| || || ||| || |||||| || Sbjct 1238 AGGCCGAAGTCCTGTTATATGTGCAATCATGTAAGTAAGCAGAGCATAGGAAGCAATATT 1297 Query 111828 AAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATT 111887 ||||||||||| | |||||||| | | ||| |||| ||||||||||| | | Sbjct 1298 GAATGGCACACCCAAACCCATATCGGCGCTACGTTGGTATAATTGACATGATAGCTCACC 1357 Query 111888 TTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 | | || ||||||| || |||||| || || |||||||| Sbjct 1358 GTTGGCAACGAAAAATTGCGCCAGACAATGACATGGTGGTAATGCCAT 1405 >seq183157 Length=4427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111811 CTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGC 111870 || ||||||||||| |||||||||| || ||| ||||| | || | || |||||| Sbjct 3468 CTATAACTAGCAATATTAAATGGCAGGCCAAGGAAAATATCACAGGAACGCTGGTATAGC 3409 Query 111871 TGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAAT 111930 |||||||| || | | | || ||||||| ||| ||| ||||||||||||||| | Sbjct 3408 TGACATGAAAGCCGACTATCTGCGGCATAAAACTGAAAAAAAGCATGACAAGGAGGCAGT 3349 Query 111931 GCCAT 111935 ||||| Sbjct 3348 GCCAT 3344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391070029662085