Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq96136 91.5 2e-13 >seq96136 Length=5821 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/312 (67%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| || |||||||||| || | |||||| | | || || || || Sbjct 5495 CCTGTGCCAATACCATCAGCACCATTCACCAATACCATCGGTATAATTGGCACATACCAC 5436 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | || || | || | |||| || || ||||| | | | | || ||| | ||| Sbjct 5435 TGTGGTTCAATCTTCTGACCATCATCAACTTCGTACGTCAATAATGGATCATCATTTGGA 5376 Query 117272 TCGAATATGT-TCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||||||| ||||| | | |||| | |||||||| ||||||| || ||| Sbjct 5375 TGGAATATGAGTCTTGTTA-ATGGTGACATCAATGTGAAAATATAACGAGCACTCGCACA 5317 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 |||||| ||||| ||||||||||||||||| |||| || || | | || | || Sbjct 5316 ATCCTTTCCACCTTGCAGACGCGTACCGAATTGACCACGTGGTTCTAGTAAATTGATATT 5257 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| | || ||| | ||||| || || || ||||| ||| ||| || | ||||| Sbjct 5256 GTTTGAACCAACATAATTTTGCGCTAAATTAACAATTGTAGATTGTAGTGACATTTCACC 5197 Query 117451 ATGGTGATACGC 117462 || ||||| || Sbjct 5196 GTGATGATAGGC 5185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545962225541000