Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq157162 179 4e-40 >seq157162 Length=2207 Score = 179 bits (198), Expect = 4e-40 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 27389 CCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTC 27448 ||||||| | | | ||||||||| || || || || || || |||||||| || ||| Sbjct 372 CCAGAAAGACGAACACAATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTT 431 Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 | ||||| ||| || || | ||||| |||| | || |||||||||||||| || || | Sbjct 432 TGGAGGTCGAGCCATCGGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAG 491 Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 | || || ||||| || || ||||||||||| || || || ||| | || |||| |||| Sbjct 492 GTATCCCACCAGATCAACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTA 551 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 | ||| | ||||| ||| ||||||||||||| || |||||| | || |||||||| || | Sbjct 552 CTCTATCCGACTACAATATCCAAAAGGAATCAACACTTCATTTGGTATTGCGTCTACGTG 611 Query 27629 GTGG 27632 |||| Sbjct 612 GTGG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569003711940400