Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq157162 163 2e-35 seq101432 116 3e-21 >seq157162 Length=2207 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || |||||| | || ||| | || || || || || Sbjct 389 ATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCG 448 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||| || |||||||| || ||||| |||||| Sbjct 449 GACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAA 508 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | ||||||||||||||||||||| | || | ||||| ||||| Sbjct 509 CAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACAAT 568 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| |||||| | || ||||| || Sbjct 569 ATCCAAAAGGAATCAACACTTCATTTGGTATTGCGTCTACGTGGTGGTAT 618 >seq101432 Length=3068 Score = 116 bits (128), Expect = 3e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||| | |||||| ||||| | || || || |||||||| |||||| |||||||| Sbjct 1451 TGGAACTCAGCACAAATACAGCTAATACGTGAGGGTAAAATGCATGGATTTTTGCGCATG 1392 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||| ||||| ||||| |||||| | | | |||| | ||| | | || Sbjct 1391 TATTGGGCTAAAAAAATATTAGAATGGGCACCTACACCTGAATTGGCTTTGGAGACGGCC 1332 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||| |||| |||||| | |||||||| |||||| | ||| ||||||| || || ||| Sbjct 1331 ATACTTTTGAATGATAAATACAGTTTGGATGGATGTGATCCAAATGGTTATGTGGGT 1275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433950025239935