Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq183169 116 2e-21 seq183258 86.0 3e-12 >seq183169 Length=4516 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 1300 GATGGAGGCGAACTGATAAATGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTA 1359 |||||||||| | || || ||||| |||||||||||||||||| ||| ||||||||| Sbjct 811 GATGGAGGCGCCCGGAAAA---GTGTCTCCTGCAGGAATCGAACCTACAACTAGCCCTTA 867 Query 1360 GGAGGGGCTCGTTATATCCATTTAACTAAG 1389 |||||||||||||||||||||||||||||| Sbjct 868 GGAGGGGCTCGTTATATCCATTTAACTAAG 897 >seq183258 Length=7175 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 27183 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 27241 ||||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||| Sbjct 2223 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTTGTCGCTGGTTCAAA 2282 Query 27242 TCCAGCAAGGGCCACCA 27258 |||||| ||||||||| Sbjct 2283 TCCAGCTGGGGCCACCA 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210459999144420