Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq183115 95.1 5e-15 >seq183115 Length=3769 Score = 95.1 bits (104), Expect = 5e-15 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 |||||| | |||||||| ||| | ||||| || | ||| ||||||||| |||||| Sbjct 2381 AGAGGTATAAACAAAGTAATTTTAGTTGGAAATCTGGGTCAAGACCCGGAAGTTCGCTAC 2440 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| || ||| ||| || |||||||||| || || || || |||||| ||| Sbjct 2441 ATGCCGAATGGCGGTGCTGTTGCCAACATCACGCTGGCTACTTCAGAAAGCTGGCGTGAC 2500 Query 7396 AAGCAGAC-CGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCG 7454 ||||| || || | | | || | | |||||| ||||| | || || || || Sbjct 2501 AAGCAAACTGGGGAAACTAAAGAGAAG-ACCGAGTGGCACCGTATTGTTTTGTTTGGCAA 2559 Query 7455 CCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAG 7514 ||||| || | || || ||||| || ||||| || || ||||| || | |||||| Sbjct 2560 GCTGGCTGAAGTTGCTGGTGAGTATCTTCGCAAAGGCTCTCAGGTTTATATTGAAGGCGC 2619 Query 7515 CCTGCGCACCCGCAAGTGG 7533 |||| || || || ||| Sbjct 2620 ACTGCAAACTCGTAAATGG 2638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194395151049990