Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq183290 91.5 2e-13 seq183044 82.4 9e-11 >seq183290 Length=12096 Score = 91.5 bits (100), Expect = 2e-13 Identities = 248/373 (66%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 139123 ATACCCATATAACGATGCGGATACGCCGCAGAAAGCATTGCATCAGTAGCAACCTTCACA 139182 ||||| | | |||| ||||| ||| |||| | ||||||||| | | || | || | Sbjct 5538 ATACCGACAAAACGGTGCGGCATCGCAGCAGCACGCATTGCATTAATTGCGG--TGCATA 5481 Query 139183 GA--ACCATTTGTTCCATTTTTAAAGCCAACGCACATAGGCAGGCCTGAAGCAATTTCAC 139240 || ||||| || || ||||||||||||||| ||| | || || ||||| ||||||| Sbjct 5480 GACTACCATCAGTACCGTTTTTAAAGCCAACGGGCATGGACAAACCGGAAGCCATTTCAC 5421 Query 139241 GGTGTGTCTGACTCTCGGTTGTACGAGCGCCGATTGCGACCCAAGAGAAAATACCTGTAA 139300 | || || || || || || || || || || || ||| ||||| | | || Sbjct 5420 GATGAGTTTGTGATTCTGTAGTGCGTGCTCCAATAGCCGACCAGCTGAAAAGATCGCCAA 5361 Query 139301 GATACTTAATCGTGAATGGGTCCAACACTTCAGTCGCTAGTGGAAGGCCTAAGCTTAATA 139360 |||||| | | || |||| | ||||| ||||| ||||| || | || || | Sbjct 5360 GATACTGAGGGCTATTAGGATCCAGTGCCTCAGTGGCTAGCGGAAGTCC-CATCTCAACA 5302 Query 139361 GTTCTAAGCA-AAGTTCGCGAGCCATTTCGAGCCCACGGTTT--ATGTCAAATGAGCCAT 139417 | |||| | || ||| || || | || | ||| || |||||||| | | | Sbjct 5301 AGATTCAGCAGCAATTGGCGCGCAATATGCAGAC--CGGCTTCCATGTCAAAGGTGTTGT 5244 Query 139418 TCAATTCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAAT 139477 || | ||| || ||||| | |||||||| || ||||| || | ||||| ||||| | Sbjct 5243 CCATATTTGGATCATTAATTAGTCCTTTCCAGCCAACAGTAGTACGGGGTTTTTCAAAGT 5184 Query 139478 AAACACGCATAAC 139490 | || ||||| || Sbjct 5183 AGACCCGCATTAC 5171 >seq183044 Length=3031 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 145743 TTACGCATGATATGTGTATAAGAACGGCTATGGATAGTCTCAGAGAACGTCCAAGTAGCA 145802 ||||| || ||||| |||||||| ||| |||||| || |||||||| | ||| || | Sbjct 1780 TTACGTATAATATGCGTATAAGATCGGGAATGGATGGTTTCAGAGAATGCCCAGGTTTCC 1839 Query 145803 ACCCATGTGTCTAATGCCGGATCGGAAATCAAAGCCATCAGGACCGCTGCAGGCGCACGA 145862 ||||| || || | | | ||| || ||||| | | || | | || ||| Sbjct 1840 ACCCAAGTTTCCAGTTCAGGAATAGAGATCAATGGTAGCAATGCTACGTTTGGACTACGT 1899 Query 145863 CCTTGAATAGAATCCAACAGACTTTGGTATTTAAGATTAGAAATAAAGATGTCTT 145917 ||||| ||||||||||||||| |||| ||||| | |||| || || |||| || Sbjct 1900 CCTTGGATAGAATCCAACAGAGTTTGATATTTCAAATTACTGATGAAAATGTGTT 1954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567027450324600