Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028754.1 Length=120098 Score E Sequences producing significant alignments: (Bits) Value seq183117 91.5 1e-13 >seq183117 Length=3786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/299 (67%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 43068 TTTTGCTAATATGTGCGTTAATAAAGCATAACTAGCAATATTGAAAGGTAGGCCTAGAAA 43127 || |||||| || |||||||| |||||| ||||||||| ||||| | |||| ||| Sbjct 2908 TTGTGCTAACATTATTGTTAATAATGCATAAGAAGCAATATTAAAAGGAACTCCTAAAAA 2967 Query 43128 ACAGTCTACAGAACGTTGTGTCCATTTAAGATCTAAGTATCCATCATTACTTACGTAACA 43187 | ||| || |||||| ||| | | ||| | | ||||| | |||||| | Sbjct 2968 AATATCTGCACTACGTTGATATAATTGACAAGATAATTTTTTATCATCAGAAACGTAAAA 3027 Query 43188 CTGAAAACCATAATGACATGGTGGTAGTGCCATCTTATCCAGTTCAGCAACGTTCCATGC 43247 |||| | ||||||||||||||||||||| || | | ||| ||| || ||||| Sbjct 3028 TTGAATTAAAGTATGACATGGTGGTAGTGCCATATTTTTAATTTCTGCAGGATTTCATGC 3087 Query 43248 GGATACTAGGTGTCTACGACCATGTGGATTATTCTTGAGTCCCTC-AATGAGTTCTAAAA 43306 |||| | |||||| || | ||||| || || | || | | | | || || Sbjct 3088 TGATAAAATGTGTCTTCGTGAAAAAGGATTGTTTTTTAAATTTTCTATTAACTCCTGCAA 3147 Query 43307 TCTGATCTCGTCCGCCAAAGTTGCGCCATTGTTTACCATATACTGGTCCTAGATTACCA 43365 | ||||| || ||| || || |||||| ||||||| || ||||||| || |||| Sbjct 3148 T-TGATCAACACCATTAAAATTACGTCATTGTCTACCATAAACAGGTCCTAAATCACCA 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383330557638205