Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq183044 100 3e-16 >seq183044 Length=3031 Score = 100 bits (110), Expect = 3e-16 Identities = 238/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 20023 ATCACTTAATGCAACCTATGTTTTTCGGTGATGAACCTGGTA---TTGCGCGTTACGATA 20079 |||| | ||| ||||||||||||||||| | || | || |||| || | || Sbjct 2131 ATCAGCTGATGGAACCTATGTTTTTCGGTCAG---CCGGTTAACATTGCACGCTTTGACC 2075 Query 20080 CCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTC 20139 || ||| ||| || || ||||| |||||||||| || | ||| |||||||| | Sbjct 2074 AACAAAAATATGGCATTTTTGAAAAACTAATTGAAAAACAACTTTCTTTTTTCTGGCGCC 2015 Query 20140 CTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAA 20199 | ||||| ||||| ||| | |||||| ||||||||| | || | ||||||||| Sbjct 2014 CAGAAGAAGTTGATGTATCACGTGATCGCATCGATTATCAAGCCTTGGCTAAACATGAAA 1955 Query 20200 AACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTG 20259 |||| || || | |||||||| ||||| | | | ||| | | || |||||| Sbjct 1954 AACACATTTTCATCAGTAATTTGAAATATCAAACTCTGTTGGATTCTATCCAAGGACGTA 1895 Query 20260 CTCCTAACACTGCTTTTATGTCCATCG-TATCTGATGTAACACTTGACACATGGATTCCT 20318 ||| ||| || || | |||| | | ||| | ||| || || ||| | Sbjct 1894 GTCCAAACGTAGCATTGCT-ACCATTGATCTCTATTCCTGAACTGGAAACTTGGGTGGAA 1836 Query 20319 ACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAA 20374 |||||||| ||||| || || ||||| || |||||||| || ||||| || || Sbjct 1835 ACCTGGGCATTCTCTGAAACCATCCATTCCCGATCTTATACGCATATTATACGTAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581400842561000