Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq183044 116 4e-21 >seq183044 Length=3031 Score = 116 bits (128), Expect = 4e-21 Identities = 214/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 75525 TTACGCTGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCG 75584 ||||| ||||||||||||| || || || |||||| ||| ||||| ||||| Sbjct 1780 TTACGTATAATATGCGTATAAGATCGGGAATGGATGGTTTCAGAGAATGCCCAGGTTTCC 1839 Query 75585 ATCCACGTTTCCATTGAAACATCAGAG-GCAATCGGGAGAAACGCCAGGTTAGGGCCGCG 75643 | ||| ||||||| | | | |||| |||| || || || || | ||| || | || Sbjct 1840 ACCCAAGTTTCCAGTTCAGGAATAGAGATCAAT-GGTAGCAATGCTACGTTTGGACTACG 1898 Query 75644 TCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTC 75703 ||| || || | ||| ||||| |||||||||| || ||| |||||| |||||| Sbjct 1899 TCCTTGGATAGAATCCAACAGAGTTTGATATTTCAAATTACTGATGAAAATGTGTTTTTC 1958 Query 75704 GTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTCG 75763 |||| | || | ||| | || || || || | ||| |||||||| || || Sbjct 1959 ATGTTTAGCCAAGGCTTGATAATCGATGCGATCACGTGATACATCAACTTCTTCTGGGCG 2018 Query 75764 CCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTGTTCTTC 75823 |||||| || || |||||||||||| | | |||| || | || || |||||||| || Sbjct 2019 CCAGAAAAAAGAAAGTTGTTTTTCAATTAGTTTTTCAAAAATGCCATATTTTTGTTGGTC 2078 Query 75824 ATATCGGGCAA 75834 | | || |||| Sbjct 2079 AAAGCGTGCAA 2089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567171120393600