Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq183207 253 2e-62 >seq183207 Length=5160 Score = 253 bits (280), Expect = 2e-62 Identities = 448/648 (69%), Gaps = 4/648 (1%) Strand=Plus/Plus Query 48714 AATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAATGGCTGATTCATATC 48773 |||| | |||| | ||| |||||| || | | | |||||| |||| ||||||||| Sbjct 373 AATAACTTCTTGTAATTCTAGTGCATTACCAATTGTTTGTCCTAAAGGCTTATTCATATC 432 Query 48774 TGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCAACCATTTCTTGTGC 48833 |||| | ||| ||||| ||| | | ||| ||||||| |||||| || ||| Sbjct 433 ACTAATAATAGCATAAATTTTTTTATTAAAAGCTTTACCAATATGTACCATTAATTTTGC 492 Query 48834 TAATGCTTTAG-AGTCTTCTAATGTTTTCATAAATGCTCCATTTCCTGTTTTAACATCTA 48892 ||| | | | ||| | ||| | | ||| || || ||||| ||||| |||| Sbjct 493 TAACTTTCTTGCAGT-TACTATATCCTGAACAAAGGCACCTTTTCCACATTTAATGTCTA 551 Query 48893 ATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTACTAGCAATTAATG 48952 || |||| ||| || ||||| || ||||||||| ||||| ||| ||||||||||| Sbjct 552 GTAAAATTAAATCAGCACCCATCGCTATTTTTTTAGACATAACACTAGCAGCAATTAATG 611 Query 48953 GAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTTTTGTCGGCAGGCA 49012 | | ||||| ||||||||| | |||||| |||||||||||||||||||| || ||||||| Sbjct 612 GTAATGAATCAACTGTTCCTGAAACATCACGTAATGCATATAATTTTTTATCAGCAGGCA 671 Query 49013 CTAAAATTCCACTTTGTCCAACTAATGC-GATTTTATGTGTATTAACTTGATTAATAAAT 49071 ||||| | | | |||| | || |||| | || | | ||||||| |||||||| Sbjct 672 CTAAATTACTAGTTTGACTAA-TAATACTCATACCAACTTTATTAACAACTTTAATAAAA 730 Query 49072 TGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTTGTCAATTGTTCCT 49131 | | | ||| || || ||||| | | || ||| ||||| ||||| || || Sbjct 731 TCTGATATTGCCAAATCACATTTAAAATTTGGAATTATTTCCAATTTATCAATAGTACCA 790 Query 49132 CCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACCCAAAGAAGCAACC 49191 || || || || ||||| || || ||||| ||||| | || ||| |||| | Sbjct 791 CCAGTAATACCCAATCCTCTTCCAGAAATTTTTGCAACCTTTAATCCACAAGCAGCAGCT 850 Query 49192 AATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGAATGTTTATCTACT 49251 |||||| ||| | ||||||| ||||||| || || ||||| || ||||||||||| | Sbjct 851 AATGGACCAAATACTAAACTAGTTTTATCACCAACACCACCAGTTGAATGTTTATCAATA 910 Query 49252 TTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAATCATGGCATTAGTT 49311 | | ||| |||| ||||| || || ||||||||| |||||| | ||| || || Sbjct 911 CTAAAACCAGTAATTTGTGATAAATCCATGGTTTCACCACTATTAATAACGGCTTTTGTA 970 Query 49312 AAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCCATT 49359 | | | ||| || |||| ||| || | ||||||| |||||| Sbjct 971 TATTCTACTAATTCATCATTAGTCATTCCCTGAAAATAAACAGCCATT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450989924595600