Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq128143 140 3e-28 >seq128143 Length=5596 Score = 140 bits (154), Expect = 3e-28 Identities = 237/342 (69%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 118326 AGCCATCTGCATGTGTATGGTGGGAGCATGTTTGTAGTTTTCCAAAAT---AAAATCTTC 118382 |||||| | |||| ||| | ||| ||||||||| | | ||| |||||| || Sbjct 1037 AGCCATTTCCATGGCTATTTTAGGATACGGTTTGTAGT---CAACAATTTCAAAATCATC 1093 Query 118383 AAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAGTGTGGGAAACGGGAG 118442 || ||||| ||||| |||||||| | ||| || || | |||| | || || ||| | Sbjct 1094 GAATTTAAAATCTTCAATATTTTTCACATCTCGCTTAATAGTTAGTTTCGGGAATGGGCG 1153 Query 118443 AGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATC 118502 |||| | | | ||| |||||||||||||||||| | |||||||||| | ||| Sbjct 1154 TGGCTTTCGTAATAATTGTTCCTTCAGTGGCTCAATGTGACTTTTATAGACATGCGTATC 1213 Query 118503 CCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGT 118562 || | ||||| | || || ||||| ||| ||||| | || ||||||||||| || Sbjct 1214 GCCCAAAGTATGAACAAAGTCTCCAGGCCGAAGTCCTGTTATATGTGCAATCATGTAAGT 1273 Query 118563 CAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTG 118622 | || | ||| || | ||| || || ||||||| |||||| || || | || Sbjct 1274 AAGCAGAGCATAGGAAGCAATATTGAATGGCACACCCAAACCCATATCGGCGCTACGTTG 1333 Query 118623 GTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||| ||||| || || ||||| ||||| ||||| |||| || Sbjct 1334 GTATAATTGACATGATAGCTCACCGTTGGCAACGAAAAATTG 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413550897038380