Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq157162 100 2e-16 >seq157162 Length=2207 Score = 100 bits (110), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || ||||| || || || | || ||||| || Sbjct 388 AATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGC-CAT 446 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| |||||| ||||| || ||||||||| | || || Sbjct 447 CGGACACCATTGAAAAT--GTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGA 504 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| ||||||| ||||| ||||||||||| || | ||| | | ||||| || Sbjct 505 TCAACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTA 564 Query 27966 CAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| |||||||| || | ||||| |||||||| |||||| | ||||| || Sbjct 565 CAATATCCAAAAGGAATCAACACTT--CATTTGGTATTGCGTCTACGTGGTGG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355067436204465