Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq135194 107 5e-18 seq94790 107 5e-18 seq183136 95.1 3e-14 seq180104 89.7 1e-12 >seq135194 Length=1065 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | |||||||| || || |||| Sbjct 354 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCTCCACCTCCTGC 295 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||||| ||| ||||| Sbjct 294 TGGATCAAAAAATGAGGTATTTAAATTTCGATCTGTTAA 256 >seq94790 Length=1096 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | |||||||| || || |||| Sbjct 389 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCTCCACCTCCTGC 330 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||||| ||| ||||| Sbjct 329 TGGATCAAAAAATGAGGTATTTAAATTTCGATCTGTTAA 291 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 ||||||||| || |||| || || || || ||||||||||| | || | || | || Sbjct 50 TTTTGTTATACCTATTATAATTGGAGGATTTGGAAATTGATTAATCCCCCTTATATTAGG 109 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || |||||||| || |||||| | | ||||||||||||||||||||| |||| ||||| Sbjct 110 AGCCCCTGATATAGCATTTCCACGAATAAACAATATAAGTTTTTGATTATTACCCCCTTC 169 Query 7722 -CTTA 7725 |||| Sbjct 170 TCTTA 174 >seq183136 Length=4119 Score = 95.1 bits (104), Expect = 3e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| Sbjct 80 AAAATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATATGCAGAAATATCACCG 21 Query 4531 GCTTGTGTTTCGACAACAGG 4550 ||||||||||| | || ||| Sbjct 20 GCTTGTGTTTCAATAATAGG 1 >seq180104 Length=4031 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 |||| |||| || ||||| |||| || ||||| ||||| |||| || || | |||| Sbjct 2738 TTATAGTTACAGCCCATGCAATTGTAATAATTTTTTTTTTAATTATACCAGTAACAATAG 2679 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || || ||||||||| | ||||| |||| ||| || || || ||||| || || Sbjct 2678 GGGGGTTTGGAAATTGACTAATTCCTCTAATAATTACAGCCCCCGACATGGCATTCCCCC 2619 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTA 7713 | ||||| || | || |||||||||||| Sbjct 2618 GACTTAATAACTTTAGATTTTGATTACTA 2590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189730579606730