Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq66438 215 4e-51 >seq66438 Length=2923 Score = 215 bits (238), Expect = 4e-51 Identities = 479/715 (67%), Gaps = 23/715 (3%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||| || || || |||||||| ||||| | ||| || | || || || ||| Sbjct 898 ACCAGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCA 957 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || || |||| || | || | ||| || || |||||||| || | || || || | Sbjct 958 ATCAAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCA 1017 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || | || || || || || | ||| || | | |||| | ||| Sbjct 1018 ATGATTTCAATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAA 1077 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCC 4609 |||||||||||||| |||||||| || | || | || || || || || || || || || Sbjct 1078 GCAAAATCACAATGTAAACCTTCATCAC-GCGAGATTAGCTCATTGGAGAATGTCAAGCC 1136 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||||| ||| | ||||| | |||||| || | ||||| || ||||||||| Sbjct 1137 GGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATAT 1196 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAA 4728 |||||| ||||| ||||| || | | || ||| || ||| | |||| | | Sbjct 1197 GCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGA-TGAGA 1255 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 ||||| || |||||| | ||| || ||||||| || || || | ||||| |||| Sbjct 1256 TCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAA 1315 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 ||| ||| | | || ||| || || || || || | ||||||||||| Sbjct 1316 ATANTTTCCATCCTT-------------AATGTAGGTATCAATAAGAATGCTATACATTT 1362 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 | ||||| | |||||| || || || ||||| || |||||||| | ||||| || | || Sbjct 1363 CTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTT 1422 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | ||||| | || || | ||| |||| ||||| || || ||||| || ||| || | Sbjct 1423 GTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGA 1482 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCCAGT 5025 | || || ||||| || |||| || | |||| ||| | |||| | ||| | Sbjct 1483 AGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGG---TAAGACGTACCCAAT 1539 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | || ||||| | | |||||| ||||| || |||||||| || ||||| || Sbjct 1540 CGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGC 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426095610562235