Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq114852 668 0.0 seq66438 237 2e-57 >seq114852 Length=3422 Score = 668 bits (740), Expect = 0.0 Identities = 1291/1885 (68%), Gaps = 36/1885 (2%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | |||||| || || | | | || ||||| ||||||| ||| ||||| ||| Sbjct 826 TTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCCA 885 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| || ||| |||| || | || || || ||| |||||| ||| | || Sbjct 886 GTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAAGTTTGCCATAGTTTGGT 945 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || |||| ||||||||| | ||| || |||||||| || || || || | ||| || ||| Sbjct 946 TCAGCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTGCC 1005 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || || || | |||||| | || ||||| | ||| ||| ||| || || | Sbjct 1006 ATCTTCATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTTCACGTATTTTT 1065 Query 77013 TCTGGAAG-GTTTGTATT--TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069 | || | |||| || ||| || ||||||| | | ||||||| || | || || Sbjct 1066 TGCGGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTTTCATT 1125 Query 77070 TCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGA 77129 ||||||| |||||| | || || | | | | | | |||| ||||||| | |||| Sbjct 1126 TCATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACAAATGATGATTAACAACTTGA 1185 Query 77130 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 77189 ||||| || || | ||| | |||| | |||||||| ||||| ||||| | ||||||| Sbjct 1186 AATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAGATTCA 1245 Query 77190 TTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTT 77249 ||||| |||| |||||||||||| || ||||| ||||| ||||||| | ||| || Sbjct 1246 TTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGGAGTTG 1305 Query 77250 CTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATT-TCCAATCCCAAAGATCTGAAG 77307 | | ||||| || | | ||||| ||||| | ||| |||| ||||| ||||| | | Sbjct 1306 CGTACGCCATGCTGCTTT-ATTTTCTCTTTCA-ATACAGTCCAGTCCCATAGATCGGTTG 1363 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 || || ||| | ||| ||||| || || || || ||| || ||| || | |||| Sbjct 1364 GTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCTTCGTATG 1423 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 ||||||||| || | | ||||||| | ||||||||| ||||||||||| || || || | Sbjct 1424 TTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCATAGTACA 1483 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 ||||||||||||| | | ||| | | || | || || | || ||| | | Sbjct 1484 TTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCGTATGGGTAACGCA 1543 Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547 ||| || || |||||||| || || || || |||||||| || || | |||||| | Sbjct 1544 TAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGTCTGAAGT 1603 Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC 77607 | || | || | ||| || | ||||||| ||| | || ||||||||||| ||||| | Sbjct 1604 TTGATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTTAGATTAC 1663 Query 77608 TAACAACTACTTTAACCACGTCCTTTA---GTTTAAGAAAATCAAATC---TTCCATCTA 77661 || || || || |||| |||| | |||| || || | | Sbjct 1664 GCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGA---AATCGTATGACTTTTCGGGTG 1720 Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG- 77720 |||||||||| || | || || ||||||| ||||||||| ||||| |||| || || Sbjct 1721 TAACAAACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTACTTCATC--CGGTGC 1778 Query 77721 -GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 | ||| | | || || || |||| |||||||||||| || ||||| | ||||||||| Sbjct 1779 TGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTG 1838 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 || ||||| ||| |||| ||||| || || || | || || ||||| || | || Sbjct 1839 ATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTG 1898 Query 77840 TGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCTCT 77898 ||||| ||||||| ||| | |||| | ||||| | | || || ||| || Sbjct 1899 CGATTCAATAATAGCAAACCAAA-GACTTTGTGCTTTCACTGTC--TTATTAGCGCGTCC 1955 Query 77899 CTCTT--TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||| ||||||| |||||||| |||| || ||||| ||||| || |||| || || Sbjct 1956 CTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGACC 2015 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| || | | |||||||||| ||||| || ||| | | ||| ||||||||||| Sbjct 2016 AGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAA 2075 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 ||||| |||||||||| |||| ||||| ||||| | | ||||||||| || || || Sbjct 2076 AAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGT 2135 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 || || || | ||| | |||||| | | ||| | |||||||||||||| ||| ||||| Sbjct 2136 GTTTTTCTTTAAATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGC 2195 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | ||||| |||||| ||| |||||||||| ||| | || ||||| | || Sbjct 2196 AAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTATTGAATAC 2255 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 |||||||||||| | | ||| || ||||| |||||||| || | ||| | || || Sbjct 2256 TCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCT 2315 Query 78257 TGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 ||||| ||| |||| | || || || || || || || || |||| | Sbjct 2316 AGCGCGTATA----CAATGTACATTGAGTCCAATACCACCAGCTGATTTGGAAATTAATG 2371 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGA 78371 | || | | || | | | || || || || || | | || ||| ||| ||| Sbjct 2372 CACATTGATGTGCTGAAGTGAATATGCCATCAATCGAATCGGCGACCATTGTCAAG-AGA 2430 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || || || | ||| | || ||| | ||| || | ||| || || |||||| Sbjct 2431 AAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGC 2490 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGA 78491 ||||| | ||| ||||||| |||||||||||| || |||| ||||| ||| | Sbjct 2491 GTAAAATAACGTTCTGAAAGTAAATTGTATGTTTCGATGGCTGCATCTATATCCTCGCCA 2550 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || || || | || |||||||| ||||||||||| || | ||||| | || |||| Sbjct 2551 TGTATACCAATGGCAACACGCATTAACATATGCTGTGGACGCTCAACAATTTTGCCATTT 2610 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 | | | | ||||| || ||||| ||||||||||||||||| || || |||||| Sbjct 2611 AATCTGAGTAAGTAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAAAGTCA 2670 Query 78612 CTCTCGTAAATAATAACAGAATTTA 78636 | || || |||||| | ||||||| Sbjct 2671 CGATCATATATAATAGCTGAATTTA 2695 >seq66438 Length=2923 Score = 237 bits (262), Expect = 2e-57 Identities = 475/702 (68%), Gaps = 22/702 (3%) Strand=Plus/Plus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || ||||| ||||| ||| | | ||||||||| || || | || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 ||| | ||| || || | || |||||||| || | || || || | || || | || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 ||| | | ||| ||| || | | |||||||| ||||| | ||| ||||||||| Sbjct 1029 AATAC-GCTCCCT-ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCA 1086 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 ||||| | ||||||||| | |||| || || || ||||| | ||||||||||| Sbjct 1087 CAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGA 1146 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 ||||||||||| | |||||| || | || ||| || ||||||||||||||| ||| Sbjct 1147 CCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACG 1206 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCGTTG 48328 || |||||||| | | | || || || | || || | || | ||||| | | Sbjct 1207 GCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAG-ATCCATGCTAG 1265 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 ||||||||||||||| ||| || ||| || ||||| ||||||||||| Sbjct 1266 TGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA--------- 1316 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 | || | ||| |||| ||| ||||| || | || ||||||||||| || || | Sbjct 1317 ----TANTTTCCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCAC 1372 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 |||||| ||||| || ||||| || ||||| || | ||||| || || ||||| || Sbjct 1373 ATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTG 1432 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 || || |||||| | | ||| ||||| || || ||||| || || || || ||||| Sbjct 1433 ACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAA 1492 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 || ||| | |||| ||| ||| || || ||| || | || ||||| Sbjct 1493 AACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCTTT 1552 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || | ||| || ||||| | |||||||| ||||| || || Sbjct 1553 GGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGC 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693077183528800