Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq114852 645 5e-180 seq66438 212 9e-50 >seq114852 Length=3422 Score = 645 bits (714), Expect = 5e-180 Identities = 1267/1852 (68%), Gaps = 30/1852 (2%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 |||||||| ||||||| ||| ||||| |||||||| || ||| |||| || | || Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||| |||||| ||| | || || |||| ||||||||| | ||| || ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || || || | ||| || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTATT---TTGAATGGAT 75634 || | ||| ||| ||| || || | | || | || | | ||| || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | | | ||||||| || | || || ||||||| |||||| ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 | | | | |||| ||||||||| ||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 ||||| ||||| ||||| | |||||||||||| |||| ||||||||||||||| ||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTT 75873 || ||||| ||||||| | ||| || | | ||||| || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 75874 TAGATATT-TCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAA 75932 | ||| |||| ||||| ||||| | |||| || ||| | ||| ||||| || | Sbjct 1335 CA-ATACAGTCCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTA 1393 Query 75933 TTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTT 75992 | || |||||| || ||| || | |||||||| ||||| || | |||||||| | || Sbjct 1394 TACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATT 1453 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCT 76051 | ||||| || || || || || || || |||||||||||||| | | ||| |||| Sbjct 1454 CACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAG-- 1511 Query 76052 TGC-GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTG 76110 ||| || | || || | || ||| | | ||| || || |||||||| | || || Sbjct 1512 TGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTG 1571 Query 76111 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTA 76170 || |||||||| || || | |||||| || || | | | ||| || | || || Sbjct 1572 TACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGATA 1631 Query 76171 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA- 76229 || ||| | || ||||||||||| ||||| | || || || || |||| Sbjct 1632 ATGATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAA 1691 Query 76230 --GTTTGAGAAAATCAAAT---TTTCCATCTATCACAAACATATTAAGAGCTATAGATGC 76284 |||||| |||| || ||| | | | ||||||||||| || || || ||||| Sbjct 1692 GCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGATGC 1748 Query 76285 TAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATT 76344 || ||||||||| ||||| |||| | | ||| | | || || ||||||| ||| Sbjct 1749 TAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATT 1808 Query 76345 ACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA 76404 |||||| || || || |||| ||||||||| || ||||| ||||||| ||||| || Sbjct 1809 ACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTA 1868 Query 76405 AAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 76464 || | | || || || || || | || ||||| ||||||| ||| | |||| | Sbjct 1869 CAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA-GACTTT 1927 Query 76465 A-GCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTC 76521 ||||| | | | || || ||| || ||||| ||||||| |||||||| |||| Sbjct 1928 GTGCTTTCACTGTC--TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTC 1985 Query 76522 AAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA 76581 || ||||| ||||| || |||| || ||||||||| | | || ||||||| ||||| Sbjct 1986 GAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCA 2045 Query 76582 CTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 || ||| | | ||| ||||||||||| ||||| |||||||||| |||| ||||| Sbjct 2046 ATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAA 2105 Query 76642 ATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701 ||||| | | | ||||||| || || || || || || | ||| | ||||| | | Sbjct 2106 ATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAATAC 2165 Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTG 76761 ||| | |||||||||||||| ||| || || | | || || |||||| ||| ||||| Sbjct 2166 ATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTG 2225 Query 76762 ATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGT 76821 ||||| ||| | || ||||| | |||||||||||||| | | || || ||||| Sbjct 2226 ATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGT 2285 Query 76822 ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTAT 76881 |||||||| || | ||| | || | || || ||| | | | || || || Sbjct 2286 GCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTGAGTCCAAT 2345 Query 76882 TCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATG-TGTCATAGATGCCCTCTA 76940 || || || ||| || |||| ||||| | | || || | | ||||| || | Sbjct 2346 ACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGA-ATATGCCATCAA 2404 Query 76941 TACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 | ||| | | || ||| ||| ||||| || || | ||| | || ||| | Sbjct 2405 TCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCG 2463 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||| |||| ||| || || ||||| || || | ||| ||||||| |||||||||| Sbjct 2464 GCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTT 2523 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 || || |||| ||||||||| ||| || || | || |||||||| ||||||||| Sbjct 2524 TCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACATATGC 2583 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || || || ||| | || ||||| | | | ||||| || ||||| |||||| Sbjct 2584 TGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCGTTTTA 2643 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||||||||| || || |||||| | || || |||||| | ||||||| Sbjct 2644 AAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATTTA 2695 >seq66438 Length=2923 Score = 212 bits (234), Expect = 9e-50 Identities = 416/609 (68%), Gaps = 26/609 (4%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || ||||| ||||| ||| | | ||||||||| || || | || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CGAT 46581 || | ||| || || | || ||||||||||| | || || || | || || | || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641 ||| | | ||| ||| || || | |||||||| ||||| | ||| ||||||||| Sbjct 1029 AATAC-GCTCCCT-ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCA 1086 Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701 ||||| | |||||||| | |||| || || || ||||| | || |||||||| Sbjct 1087 CAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGA 1146 Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761 ||||| ||||| | |||||| || | || ||| || ||||||||||||||| || Sbjct 1147 CCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACG 1206 Query 46762 GCCGCGAATGC---GACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTT 46815 || || ||||| |||| || || || || | || | || |||| ||||| | Sbjct 1207 GCAGCAAATGCAATGACACGT---TCACCAAAATTAGCCGCTTTTGATGAGATCCATGCT 1263 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 | |||||||||||||| ||| || ||| || ||||| |||||||||| | | Sbjct 1264 AGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAA----ATAN 1319 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 ||| | ||| |||| || ||||| || | || ||||||||||||||||| Sbjct 1320 TTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGC 1370 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 | ||||| || || || ||||| || ||||| || | |||||| ||||| ||||| ||| Sbjct 1371 ACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCT 1430 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 || || |||||| | ||| ||||| || || ||||| || || || || || Sbjct 1431 TGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCT 1490 Query 47056 AATACATGT 47064 || || ||| Sbjct 1491 AAAACGTGT 1499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711300933614400