Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq182330 113 7e-20 >seq182330 Length=1421 Score = 113 bits (124), Expect = 7e-20 Identities = 251/371 (68%), Gaps = 8/371 (2%) Strand=Plus/Minus Query 17395 AAATCAATATAGTGATGAATCAATTGATCTTTTGGAAGGTTTAGAAGGTATCAGAACACG 17454 |||| | |||| || | | |||||| | |||| ||||| |||||| | |||| ||| Sbjct 368 AAATGATTATAATGCTAACTCAATTCAAGTTTTAGAAGGACTAGAAGCAGTTAGAAAACG 309 Query 17455 TTTTGATATGTATGTGGGTGGAAAAG-ATTCAGCGGCATTTCATC---TTGTAAAAGAAG 17510 || |||||| | ||| | | | || || ||| |||| | || |||| Sbjct 308 ACCTGGAATGTATATTGGTTCCACTGCAGAAAGAGG-ATTACATCACTTAGTTTGAGAAA 250 Query 17511 TAGTGGACAACTCTATTGATGAAGCGATCAATGGATATTGTACTAATATTAATATTACAT 17570 |||| || || || ||||||||| || || | |||||| || ||| | | || | Sbjct 249 TAGTTGATAATGCTGTTGATGAAGTTATTGCCGGTTTTTGTACAAAAATTTCTGTAAC-T 191 Query 17571 ATGATGAAAAACTCAATCAAATTTCAATTGAAGATAATGGTCGTGGTCTTCCTACTGGTA 17630 || | ||||| ||| |||| | | | ||||||||||||| ||| ||||||||| || Sbjct 190 ATTACTAAAAAT--AATGAAATATTAGTAAAAGATAATGGTCGAGGTATTCCTACTGATA 133 Query 17631 TTAATAAGAAGACTAAAAAACCTACAATTGAAGTACTTTTTACTTATATGCATGCAGGTG 17690 | || |||||||| | | ||| | ||| |||||||| | ||||| |||| Sbjct 132 TACATCCAAAGACTAATATTTCAACAGTAGAAACGGTTTTTACTACATTACATGCTGGTG 73 Query 17691 GAAAATTTAATAAGGATAGCTTTAAAGTATCAGGCGGTAAGAATGGTATTGGTTTAAAAG 17750 |||||||| |||| | | | |||||||||||| ||| | ||||| ||||| || Sbjct 72 GAAAATTTGATAATGGTTCTTATAAAGTATCAGGTGGTTTGCATGGTGTTGGTGCTTCAG 13 Query 17751 CAGTTAATGCT 17761 ||| |||||| Sbjct 12 TAGTAAATGCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 801366103536400