Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq183117 84.2 2e-11 >seq183117 Length=3786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 190/284 (67%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 14805 TGTTAATAAAGCATAACTAGCAATATTGAAAGGTAGGCCTAGAAAACAGTCTACAGAACG 14864 ||||||||| |||||| ||||||||| ||||| | |||| |||| ||| || ||| Sbjct 2923 TGTTAATAATGCATAAGAAGCAATATTAAAAGGAACTCCTAAAAAAATATCTGCACTACG 2982 Query 14865 TTGTGTCCATTTAAGATCTAAGTATCCATCATTACTTACGTAACACTGGAAACCATAGT- 14923 ||| ||| | | ||| | | ||||| | |||||| | || || | ||| Sbjct 2983 TTGATATAATTGACAAGATAATTTTTTATCATCAGAAACGTAAAATTG--AATTAAAGTA 3040 Query 14924 -GACATGGTGGTAATGCCATCTTATCCAATTCAGCAACGTTCCATGCGGATACTAGGTGT 14982 |||||||||||| |||||| || | | ||| ||| || ||||| |||| | |||| Sbjct 3041 TGACATGGTGGTAGTGCCATATTTTTAATTTCTGCAGGATTTCATGCTGATAAAATGTGT 3100 Query 14983 CTACGACCATGTGGATTATTCTTGAGACCCTCAATGAGTTCTAGAATCTGATCTCGTCCG 15042 || || | ||||| || || | | || || | || | | ||||| || Sbjct 3101 CTTCGTGAAAAAGGATTGTTTTTTAAATTTTCTATTAACTCCTGCAATTGATCAACACCA 3160 Query 15043 CCAAAGTTACGCCACTGTTTACCATATACTGGTCCTAGATTACC 15086 ||| ||||| || ||| ||||||| || ||||||| || ||| Sbjct 3161 TTAAAATTACGTCATTGTCTACCATAAACAGGTCCTAAATCACC 3204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355319671472570