Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq183157 145 1e-29 >seq183157 Length=4427 Score = 145 bits (160), Expect = 1e-29 Identities = 212/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 99468 ATGAAACAATATTTGGAATTAATG-AGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGA 99526 |||||||| ||| ||||||||||| |||| | | | || | || | ||| || Sbjct 2924 ATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAAC-ATGGTACAGCAAAAAATGA 2982 Query 99527 CCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGA 99586 ||| ||||| | ||| || ||||| | ||||| ||||||||||| |||||||| ||| Sbjct 2983 CCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTGA 3042 Query 99587 AGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCT 99646 ||| ||||| || || || || || || ||||| | || || ||||||||| | | Sbjct 3043 AGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGTT 3102 Query 99647 TTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTG 99706 |||||||| | || ||||| |||| | || |||||||| || || |||| || Sbjct 3103 ATGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTTG 3162 Query 99707 GAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 | |||| |||| || || || |||||| | || || ||||| ||||| || ||||| Sbjct 3163 GGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCG 3219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732592837840200