Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq183044 116 4e-21 >seq183044 Length=3031 Score = 116 bits (128), Expect = 4e-21 Identities = 214/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 45146 TTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTGT 45205 |||| || | ||| |||||||| || || | || |||| | | |||||||||||| | Sbjct 2089 TTGCACGCTTTGACCAACAAAAATATGGCATTTTTGAAAAACTAATTGAAAAACAACTTT 2030 Query 45206 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAA 45265 | || |||||||| || |||||||| ||| | || || || || | ||| | Sbjct 2029 CTTTTTTCTGGCGCCCAGAAGAAGTTGATGTATCACGTGATCGCATCGATTATCAAGCCT 1970 Query 45266 TGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATA 45325 || | |||| || ||| |||||| ||| || |||||||||| ||||| ||| Sbjct 1969 TGGCTAAACATGAAAAACACATTTTCATCAGTAATTTGAAATATCAAACTCTGTTGGATT 1910 Query 45326 CCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTG-CCTCTGATGTTTCAATG 45384 | || || |||||| | || ||| | || || || || |||| |||| | | | || Sbjct 1909 CTATCCAAGGACGTAGTCCAAACGTAGCATTGCTACC-ATTGATCTCTATTCCTGAACTG 1851 Query 45385 GAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACAC 45444 ||||| ||| | ||||| ||||| ||| |||||| || ||| ||| |||||| || Sbjct 1850 GAAACTTGGGTGGAAACCTGGGCATTCTCTGAAACCATCCATTCCCGATCTTATACGCAT 1791 Query 45445 ATTCAGCGTAA 45455 ||| ||||| Sbjct 1790 ATTATACGTAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575251763607800