Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq183157 192 9e-44 seq183074 91.5 2e-13 >seq183157 Length=4427 Score = 192 bits (212), Expect = 9e-44 Identities = 226/306 (74%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||| |||||||| ||| ||| |||||| |||| | || | |||| ||| Sbjct 2924 ATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAACATGGTACAGCAAAAAATGAC 2983 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 || || |||| || || || |||||||| || | || ||||| ||||| |||| ||| Sbjct 2984 CGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTGAA 3043 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || |||||||| || ||||||||||| ||||| | || ||||| ||||| || | Sbjct 3044 GGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGTTA 3103 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 |||||||||| || || || || ||| ||| ||||||| || || || | || ||| Sbjct 3104 TGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTTGG 3163 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 || ||||||||| || |||| |||||| | || || || || || || |||||||| | | Sbjct 3164 GATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCGCAAC 3223 Query 202091 TGGATT 202096 |||||| Sbjct 3224 TGGATT 3229 >seq183074 Length=3272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 3488 TATTGGCGCGGTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCT 3547 || ||| | ||||| ||||||| ||| | |||||||||||||||||| | |||| | || Sbjct 1516 TAGTGGTGGGGTACCCAAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCTTC-GACT 1574 Query 3548 TCGTAGGTTCAAATCCTTCCCTCGCCACCAATATT 3582 ||| |||||| |||||||||| | |||||| |||| Sbjct 1575 TCGAAGGTTCGAATCCTTCCCCCACCACCATTATT 1609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786197736918200