Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq183157 113 7e-20 seq183074 86.0 1e-11 >seq183157 Length=4427 Score = 113 bits (124), Expect = 7e-20 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 200091 AAAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAA 200150 ||| || ||||| || |||| || |||| |||| ||| || ||||| || || Sbjct 2974 AAAAAATGACCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAA 3033 Query 200151 TCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCA 200210 | ||| || ||||| || | || || ||||| || ||||| || | ||||||||||| Sbjct 3034 TTTACGTGAAGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCA 3093 Query 200211 CGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGT 200270 || |||| |||||||| | || || || |||||| |||||||| || || || || Sbjct 3094 TGAATTGTTATGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGT 3153 Query 200271 CACCATTTGGGACGAATGGGCG 200292 | |||||||| ||||||||| Sbjct 3154 TTCTATTTGGGATGAATGGGCG 3175 >seq183074 Length=3272 Score = 86.0 bits (94), Expect = 1e-11 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 3037 TGGCGCGGTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCG 3096 ||| | ||||| ||||||| ||| | |||||||||||||||||| | |||| | ||||| Sbjct 1519 TGGTGGGGTACCCAAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCTTC-GACTTCG 1577 Query 3097 TAGGTTCAAATCCTTCCCTCGCCACCA 3123 |||||| |||||||||| | |||||| Sbjct 1578 AAGGTTCGAATCCTTCCCCCACCACCA 1604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781565175360000