Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq183157 150 3e-31 seq183288 93.3 6e-14 >seq183157 Length=4427 Score = 150 bits (166), Expect = 3e-31 Identities = 213/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTT-GAACGAAGGTCACGAGAAAGCTGA 196072 |||||||||||| ||||||| ||||| || | |||| | ||| | ||| ||| Sbjct 2924 ATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAAC-ATGGTACAGCAAAAAATGA 2982 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| || || | || || | ||| |||| || |||| ||||| ||| | | || | Sbjct 2983 CCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTGA 3042 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 ||| || ||||| || ||||||||||| | ||||| | || ||||| || ||| |||| Sbjct 3043 AGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGTT 3102 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||||| | ||||| || || ||| ||||||||||| || || || ||| || Sbjct 3103 ATGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTTG 3162 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||| ||||| ||||| |||| || || || || || || || || || ||||| Sbjct 3163 GGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCG 3219 >seq183288 Length=12247 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 11947 CTCTGTAGTTCAGTAGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 12006 Query 5547 TGCCAGAGTCGCCA 5560 | ||||| |||| Sbjct 12007 AGTCAGAGGAGCCA 12020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768542281772200