Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq182134 551 4e-152 seq183244 408 3e-109 seq143033 152 3e-32 seq183208 141 6e-29 seq183115 134 9e-27 >seq182134 Length=1323 Score = 551 bits (610), Expect = 4e-152 Identities = 896/1281 (70%), Gaps = 14/1281 (1%) Strand=Plus/Plus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 ||||||||||||||||| || || | || |||||||| | || | ||| || || || Sbjct 50 CCAGCATAGTTATCAAAACGAGACCACTGACCGTTAAAGGTTAAGCGCACTGTCCCGATG 109 Query 96755 GGGCCATTTCGTTGCTTTCC---GATAATTACCTCGGCAATGCCCTTCATTTCGCTATCC 96811 ||||| || ||||| || || ||||||| ||||||| || || | | |||| Sbjct 110 GGGCCGTTACGTTGTTTGCCTAGGATAATT---TCGGCAACCCCTTTGAGATTACTATTT 166 Query 96812 GGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCT 96871 ||||| ||||| |||||||| | ||||| || | || || || |||||||| | Sbjct 167 TCATGATATACTTCATCGCGATAGATGAACATAATTAAATCAGCATCTTGCTCAATGGAA 226 Query 96872 CCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGA 96931 || |||||||| ||||| || || ||||| |||||||| || |||||||| ||||| || Sbjct 227 CCAGATTCACGCAAATCGGAGTTAACCGGACGTTTGTCTGCTCGCTGTTCCAGCGAGCGG 286 Query 96932 TTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAG 96991 ||||| || |||||||| |||||||| ||||| | || ||||| | | |||||| ||| Sbjct 287 TTAAGCTGCGACAATGCTACCACCGGCACTTGCAGCTCTTTCGCTAGTGACTTCAGCGAG 346 Query 96992 CGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGT 97051 || || || || || || || | ||| || ||||| ||| |||| || ||||| | Sbjct 347 CGTGAGATTTCAGCGATCTCTAACGTGCGATTATCAGATAGCGCCGGAACACGCATCAAC 406 Query 97052 TGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCG 97111 || || ||||| ||||| |||||||| || ||||| | || | || ||||| | | Sbjct 407 TGAAGATAGTCAATCATGATCATGCTTAAGCCACCGTGCTCACGGAAGACTCGACGCGAG 466 Query 97112 CGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTG 97171 || | ||| | ||| || || || || | |||||||| ||||| || || | || Sbjct 467 CGAGCACGCATCTCGGTTGGTGTTAGACCAGAGGAGTCATCTATAAACATGTTTTTTTTC 526 Query 97172 TCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCT 97231 |||| || || |||||| | | || | |||||||||||||| || | || || ||| Sbjct 527 TCCAGCAAAAGACCCATAGTACTGGAGATACGCGCCCAATCCTCATCATCGAGCTGACCT 586 Query 97232 GTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGG 97291 ||||||||||| || |||||||| || | ||||||| | |||||||| | || Sbjct 587 GTTCGAATACGCGTTTGATCAACACGAGACAGAGAAGATAACATACGCATCATGATTTGT 646 Query 97292 TGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGT-TACGAACTGCGGCATT 97350 | || |||||||| | |||||| | ||| || || || || | ||| | | |||||||| Sbjct 647 TCGCCAGGCATCTCTAAGCTAAAGATCAACACTGGTTTTTCCTGTACCATC-GCGGCATT 705 Query 97351 TTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGAT 97410 ||| ||||||||||| |||||||| || ||||| || || ||||| || ||||| || Sbjct 706 TTCACACAGATTCATCGCGAACGTGGTTTTGCCCATTGACGGACGGGCAGCAACAATAAT 765 Query 97411 GAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAG 97470 | ||| || || | || || ||||| ||||| | ||| | ||||||||||||| Sbjct 766 CAAATCTGAGCGTTGCAATCCAGCAGTCTTTTTATTCAAATCCTGATATCCGGTATCAAG 825 Query 97471 TCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATC 97530 || || ||||||||||| || || ||| ||| || || || | ||||| || Sbjct 826 CCCAGTAACACCATCATGTGGCGTTTGGTACAGTAATTCAATACGTGAAATAGTTGCTTC 885 Query 97531 GAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTT--GTCGTTTTTCAGCTATT 97588 ||| || | || |||||| | || || || | || || || || || || Sbjct 886 GAGGATTTGATCAATGCTTTTTGGGC--CTGCCTCTTTATTAGTTCTGTTCTCCGCGATC 943 Query 97589 TCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCA 97648 | ||| ||||| ||| || | ||| ||||| || | ||||| || || | | | Sbjct 944 TGAAACACGCGTGATTCCGCAAGATCGAGCAAATCTTCGCTGCTACGTCCCTGTGGATCG 1003 Query 97649 TATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCA 97708 || ||||| || || ||||||||||| || | ||||| ||||| |||| || ||||| Sbjct 1004 TAACCAGCATCTGCAATTTCATTTGCTACAGCGATCATCTCACGCACAATTGCTCGTTCG 1063 Query 97709 CGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCC 97768 || || ||||| |||||||||| ||||| ||||| || ||||| || ||||| | ||| Sbjct 1064 CGCACTATATCTGCATAAGCACCTATATTAGCCGCACTTGGCGTATTTTTTGATAGCTCA 1123 Query 97769 GCAAGGTACGCAAAACCACCGGCGCGTTCT-AATTTACCGTTCTGTTCAAGTGCTTCAGC 97827 || || || || || ||||| | | | || | | || ||| ||| | | ||||| Sbjct 1124 GCGAGATAGGCGAATCCACCAAC-CATACTCAGCTCGCCTTTCGTTTCCATCGATTCAGA 1182 Query 97828 AAGTGTTATCAAATCAATCGGTTTGCCATGACTTAATAACCTCTCCATCTCACTGAAAAT 97887 || || || |||||| ||||| || || ||||| ||| |||||| |||| || Sbjct 1183 GAGGGTAATTGGATCAATTGGTTTACCCTGTTCCAATAATTTCTGCATCTCCATGAAGAT 1242 Query 97888 TTCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCA 97947 ||||| | | | ||||||| | || || | ||| || | | | |||||| Sbjct 1243 CATGCGATGGGACCGGTTGAAAAAATCTTTCGCCACCACACGCTCAGAAATATTATCCCA 1302 Query 97948 GCGGCAGTTATCAAGCATTAA 97968 ||| |||||| |||||||| Sbjct 1303 GCGTTCGTTATCTAGCATTAA 1323 >seq183244 Length=6589 Score = 408 bits (452), Expect = 3e-109 Identities = 439/576 (76%), Gaps = 10/576 (2%) Strand=Plus/Minus Query 61483 TCAGTCGTCCGTGCGGAGGTACTGGTAGAGGGTTTCCCGGCTGATGTTGAACTCGCGGGC 61542 ||||||||| | |||||| || || | |||||||| ||||| |||||||||||||| Sbjct 2188 TCAGTCGTCTATTTTGAGGTATTGATACAACGTTTCCCGACTGATATTGAACTCGCGGGC 2129 Query 61543 AAGCTGCGCCTTGGGCTCGCCGGCCGTCGCTCGCTGCCGCAGGGTAGCA-GCCTGCTCA- 61600 |||||| || || || ||||| || | || | ||| || | | | ||| Sbjct 2128 AAGCTGGGCTTTTTTTTCACCGGCAGTGACGCGACG--GCA---TAACTCGACCACTCGC 2074 Query 61601 TCGGAC---AGGGCTTTCTTGCGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATG 61657 |||| | || |||||||| || || || || || || || |||||||| | | |||| Sbjct 2073 TCGGGCGCGAGCGCTTTCTTACGACCACGATAGGCCCCTCGTTGCTTGGCGAGCGTGATG 2014 Query 61658 CCCTCACGCTGCCGCTCGCGGATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACC 61717 |||||||||||||||||||| ||||||||||| |||||||| || || |||||||| ||| Sbjct 2013 CCCTCACGCTGCCGCTCGCGAATCAGGGCGCGTTCGAACTCGGCAAAAGCCCCCATTACC 1954 Query 61718 GACAGCATCAGGTTGGCCATCGGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGG 61777 || ||||||| ||| |||||||||||| ||||||| |||| ||| ||| || | | Sbjct 1953 GAAAGCATCAAGTTCGCCATCGGCGAGCTCTCGCCAATGAAGGTTAGGTGCTCTTTGACG 1894 Query 61778 AACTCGATGCGCACGCCGCGCTGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGG 61837 || |||||||| | |||||||| |||| |||| ||||| | |||||||| || | | Sbjct 1893 AATTCGATGCGTATACCGCGCTGGATCAGGCTCTGCACCAAATGGCGCAGGTCGTCTAAG 1834 Query 61838 TTGCGGGCCAGCCGATCCATGCTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTC 61897 || || || || |||||||| || ||||| ||||| ||||| ||||| |||||||| | Sbjct 1833 TTCCGCGCTAGGCGATCCATACTGTGCACTACCACCGTATCACCTTCACGGACGAACCCA 1774 Query 61898 AGCAGCGCTTCGAGCTGGGGGCGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAACACC 61957 |||||||| | |||||| ||||| | || ||||||||||| |||||||| ||||||||| Sbjct 1773 AGCAGCGCGTTGAGCTGCGGGCGTTTTGTATCCTTGCCCGACGCCTTGTCAGTGAACACC 1714 Query 61958 TTGCTCACCTGGGTTTGTTCCAGCTGGCGTTCCGGGTTCTGGTCAAAGCTGCTGACCCGG 62017 ||| | ||| ||| ||| || || || ||||| |||||||||||||||||||| ||| Sbjct 1713 TTGTCTATTTGGATTTTTTCTAGTTGCCGCTCCGGATTCTGGTCAAAGCTGCTGACGCGG 1654 Query 62018 ACGTAGCCGATGCGGTGCCCCTGCACGATGTCTCCT 62053 | ||||| | || || ||||||| || ||||| Sbjct 1653 ATATAGCCAACACGTTGTCCCTGCAAGAGACCTCCT 1618 Score = 264 bits (292), Expect = 7e-66 Identities = 382/539 (71%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 61499 AGGTACTGGTAGAGGGTTTCCCGGCTGATGTTGAACTCGCGGGCAAGCTGCGCCTTGGGC 61558 || || || || || ||||| ||||| || |||||||| |||||||| || || Sbjct 4136 AGATATTGATACAGCGTTTCACGGCTAATACCAAACTCGCGAGCAAGCTGGGCTTTTTTT 4195 Query 61559 TCGCCGGCCGTCGCTCGCTGCCGCAGGGTAGCAGCCTGCTCATCGGACAGGGCTTTCTTG 61618 || || |||| |||||| | || | | || || |||||| | ||| || Sbjct 4196 TCACCATCCGTTGCTCGCCGTCGAACTTCAATTTGTTGTTCTGAGGACAGTGATTTTTTT 4255 Query 61619 CGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATGCCCTCACGCTGCCGCTCGCGG 61678 || || | ||| ||||||||| ||||||| || ||||| || || ||||| || || || Sbjct 4256 CGTCCACTGTAAGCGCCACGCAGCTTGGCTAAAGCGATACCTTCCCGCTGACGTTCATGG 4315 Query 61679 ATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACCGACAGCATCAGGTTGGCCATC 61738 || | | | |||||||| || || ||||||||||| || ||||| ||||| ||||| Sbjct 4316 ATTAAAGAATGTTCGAACTCGGCAAATGCCCCCATCACTGAAAGCATTAGGTTTGCCATT 4375 Query 61739 GGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGGAACTCGATGCGCACGCCGCGC 61798 || || || ||||||||||| ||||| || || | || ||||| ||||| || Sbjct 4376 GGTGAATCTTCGCCAGTGAATGTCAGGCATTCTTTAACAAATTCGATACGCACTCCTTTA 4435 Query 61799 TGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGGTTGCGGGCCAGCCGATCCATG 61858 || || || || ||||| | || |||| ||||| ||||| || |||| || ||||| Sbjct 4436 TGGGTAAGATTTTGTACTAGACGGCGCAAATCATCTAGGTTACGAGCCAATCGGTCCATA 4495 Query 61859 CTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTCAGCAGCGCTTCGAGCTGGGGG 61918 ||||| || ||||| | || || || || ||||| || || | || |||| || Sbjct 4496 CTATGAACTACCACGATGTCTCCATCACGCACGAATGACAACATTGAATCCAGCTCTGGC 4555 Query 61919 CGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAACACCTTGCTCACCTGGGTTTGTTCC 61978 ||||| ||||| || |||||||| || || ||| || || |||||| || || | | Sbjct 4556 CGCTGAGTGTCTTTACCCGATGCTTTATCAACGAAGACTTTATCCACCTGAGTCTGATTC 4615 Query 61979 AGCTGGCGTTCCGGGTTCTGGTCAAAGCTGCTGACCCGGACGTAGCCGATGCGGTGCCC 62037 || || ||||| ||||||||||||||||| || ||||||| ||||| || || || || Sbjct 4616 AGTTGCCGTTCTGGGTTCTGGTCAAAGCTACTTACCCGGATATAGCCAATACGTTGACC 4674 >seq143033 Length=1010 Score = 152 bits (168), Expect = 3e-32 Identities = 117/139 (84%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 38359 CCCGCCGCTAAAATGTTACGAGCGCCGTTTACATCGGCGTTCGCTGTATATCCACAATCC 38418 || |||||||||||||||||||| || |||||||| ||||||| ||||||||| || || Sbjct 178 CCTGCCGCTAAAATGTTACGAGCACCATTTACATCAGCGTTCGTTGTATATCCGCATACC 119 Query 38419 CGACACACGAATTTACTTTGTGACAGGCGGTTTTCTTTCGCTGTATGGCCACAGCACGCG 38478 |||||| |||||| |||||||| |||||||||||||| || ||||| |||||||| | Sbjct 118 TGACACATGAATTTGCTTTGTGATAGGCGGTTTTCTTTTGCAGTATGACCACAGCAGGAA 59 Query 38479 CAACGCTGGCTTGTGTACG 38497 || | |||||| || |||| Sbjct 58 CATCTCTGGCTAGTATACG 40 Score = 131 bits (144), Expect = 1e-25 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 38229 TGACATCCTCCACGCCCTTCGGGGTGTGGATTCCTGCTATGTTCAGGCTGTCGCCTGAAT 38288 ||||||||||| |||||| ||| |||||||| | | |||||| | | | |||||| Sbjct 520 TGACATCCTCCCCGCCCTAAAGGGCAAGGATTCCTACCACGTTCAGACCGAAGTCTGAAT 461 Query 38289 CATTTCGGAGGGTTCCTGCTTCAACGGGCGGTCTGACTGCACCAT-CCCTCCACAGGCAA 38347 ||| |||| |||||||||||||| ||| || || | | || || ||||||||||||| Sbjct 460 CATCTCGGTGGGTTCCTGCTTCACAGGGAGG-CTAAACGTACTATCCCCTCCACAGGCAG 402 Query 38348 GCACGGCGTGCCCCGCCGCTAAAATGTTACGAGCGCCGTTTACA 38391 ||| || || || |||||||||||||||||||| || |||||| Sbjct 401 ACACCGCATGTCCTGCCGCTAAAATGTTACGAGCACCATTTACA 358 >seq183208 Length=5204 Score = 141 bits (156), Expect = 6e-29 Identities = 225/316 (71%), Gaps = 14/316 (4%) Strand=Plus/Plus Query 38300 GTTCCTGCTTCAACGGGCGGTCTGACTGCAC---CATCCCTCCACAGGCAAGCACGGCGT 38356 ||||||||||| ||||| || ||||| || | | ||||||||||| | || | | Sbjct 3514 GTTCCTGCTTCGACGGGAGGCCTGACGAGACAGACTTACCTCCACAGGC---CGCGTCAT 3570 Query 38357 GCCCCGCCGCTAAAATGTTACGAGCGCCGTTTACATCGGCGTTCGCTGT-ATATCCACAA 38415 | |||||||||||||||||| ||||| | ||| | ||||| || ||| || || Sbjct 3571 GTTTTCTCGCTAAAATGTTACGAGCACCGTTAATATCAGTCTTCGCCGTTATAACCGCAT 3630 Query 38416 TCCCGACACACGAATTTACTTTGTGACAGGCGGTTTTCTTTCGCTG-TATGGCCACAGCA 38474 | |||| | |||||||||||| |||| ||| ||||| || | || |||| | | | Sbjct 3631 ATCTGACATATGAATTTACTTTGAGACAAGCGATTTTCCTTTGGTGGTATGACTGTAATA 3690 Query 38475 CGCGCAACGCTGGCTTGTGTACGCTGGCGGCACTGCCAGTAC---CTGACCGCCAC-GCC 38530 | | ||||| || ||||| || || | || | | || |||||| || | ||| Sbjct 3691 GGTATACCGCTGACTGGTGTAAGCCGGAAGTACAGTTATTAATATCTGACCTCCCCCGCC 3750 Query 38531 AGAGCTGCTTGTACTCAAGCTGGCGGCGCATTTCATACCAGCCCTGATCCAGTATCGAAC 38590 |||||||||| || || ||||| | | ||||||||| |||||| | ||| | ||| || | Sbjct 3751 AGAGCTGCTTTTATTCCAGCTGACCGTGCATTTCATGCCAGCCTTAATCTAATATTGAGC 3810 Query 38591 GGTTTAAACCTGATTT 38606 | ||| ||||||||| Sbjct 3811 GATTT--ACCTGATTT 3824 >seq183115 Length=3769 Score = 134 bits (148), Expect = 9e-27 Identities = 224/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 44714 CATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGC 44773 ||| ||||| ||||| || | || || | ||| || || || ||| || || || Sbjct 2707 CATCTGCATAGTGCCTCCAACATTTACTATTACTTCAGTAGTATATTTTTCAACCCCTGC 2648 Query 44774 GTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCG 44833 | ||| ||||| ||||| |||| ||| ||||| || || |||||||| ||||| || Sbjct 2647 TTGATCAGTCCATTTACGAGTTTGCAGTGCGCCTTCAATATAAACCTGAGAGCCTTTGCG 2588 Query 44834 TAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGT 44893 | |||||||| |||| |||||| || || || |||||||| | ||||| || || Sbjct 2587 AAGATACTCACCAGCAACTTCAGCCAGCTTGCCAAACAAAACAATACGGTGCCACTCGGT 2528 Query 44894 TTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGAG 44953 | |||||| || || ||||||||||| ||||| ||| || || | ||| Sbjct 2527 CTTCTCTTTAGTTTCCCCAGTTTGCTTGTCACGCCAGCTTTCTGAAGTAGCCAGCGTGAT 2468 Query 44954 TCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTACC 45013 | | || || |||||||| || || || | | ||||||||||| ||||| | || Sbjct 2467 GTTGGCAACAGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCTTGACCCAGATTTCC 2408 Query 45014 AATCAGGATGACTTTGTTTACACC 45037 || | || |||||||||| ||| Sbjct 2407 AACTAAAATTACTTTGTTTATACC 2384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330160001691970