Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq183115 127 6e-25 >seq183115 Length=3769 Score = 127 bits (140), Expect = 6e-25 Identities = 184/258 (71%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 36516 TCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGG 36575 ||||||||||||||||| | || |||||| || |||||||| || ||||| ||||| Sbjct 2643 TCAGTCCATTTACGAGTTTGCAGTGCGCCTTCAATATAAACCTGAGAGCCTTTGCGAAGA 2584 Query 36576 TATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGT 36635 || || || |||||||| || || || || || | |||||||| |||||||| |||| Sbjct 2583 TACTCACCAGCAACTTCAGCCAGCTTGCCAAACAAAACAATACGGTGCCACTCGGTCTTC 2524 Query 36636 TCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTG 36695 ||||| |||| || || ||||| || ||| || || || || | | |||||| Sbjct 2523 TCTTTAGTTTCCCCAGTTTGCTTGTCACGCCAGCTTTCTGAAGTAGCCAGCGTGATGTTG 2464 Query 36696 ACAATTGCAGAACCTGATGCTGAA--TATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGA 36753 ||| ||| || || | | | || |||||| ||||| | || ||| |||| | Sbjct 2463 GCAACAGCACCGCC--ATTCGGCATGTAGCGAACTTCCGGGTCTTGACCCAGATTTCCAA 2406 Query 36754 CAATAATTACTTTATTTA 36771 | | ||||||||| |||| Sbjct 2405 CTAAAATTACTTTGTTTA 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151752171429540