Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq183115 131 4e-26 >seq183115 Length=3769 Score = 131 bits (144), Expect = 4e-26 Identities = 198/279 (71%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 26622 ATTGCCTCCTTGCTTGCCACCA---AGCATTTGCATGGTTCCACCAACGCCAACGATGAC 26678 ||||||||| || ||| || | ||||| ||||| || || ||||| || || || Sbjct 2734 ATTGCCTCCCTGACTGCGACTACCCAGCATCTGCATAGTGCCTCCAACATTTACTATTAC 2675 Query 26679 TTCGGTAGTGAAC----CGATCCTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATT 26734 ||| ||||| | | | || |||||| |||| |||||| | || ||| | Sbjct 2674 TTCAGTAGTATATTTTTCAACCC---CTGCTT-GATCAGTCCATTTACGAGTTTGCAGTG 2619 Query 26735 TGCCTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTT 26794 |||||||| |||||||| ||| ||||| || |||||||| | |||| ||| ||||| | Sbjct 2618 CGCCTTCAATATAAACCTGAGAGCCTTTGCGAAGATACTCACCAGCAACTTCAGCCAGCT 2559 Query 26795 TCCCGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTAT 26854 | || || || | |||||||||||| |||| ||| || || ||||||||||| | Sbjct 2558 TGCCAAACAAAACAATACGGTGCCACTCGGTCTTCTCTTTAGTTTCCCCAGTTTGCTTGT 2499 Query 26855 CACGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAA 26893 ||||||| |||||| ||||| | || | ||| |||| Sbjct 2498 CACGCCAGCTTTCTGAAGTAGCCAGCGTGATGTTGGCAA 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129014570689950