Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq183286 122 2e-22 seq148975 95.1 3e-14 seq116278 95.1 3e-14 seq114190 95.1 3e-14 seq88750 95.1 3e-14 seq72905 95.1 3e-14 seq50522 95.1 3e-14 seq120559 84.2 5e-11 >seq183286 Length=10622 Score = 122 bits (134), Expect = 2e-22 Identities = 254/373 (68%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479 |||| ||| | ||||| ||||| || || ||||| || || ||||| || ||||||| Sbjct 5794 ATGCAAAAATTTGACCCTTATATTAATGTTGATCCAGGTACTATGAGTCCTTATCAACAT 5735 Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539 || ||||| | || || ||||||||||||||| ||| | ||| | || || || ||| Sbjct 5734 GGTGAAGTATATGTAACTAGTGATGGTGCTGAAACTGATTTAGATTTAGGTCATTATGAA 5675 Query 301540 CGTTTCACTTCAT-TAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTT 301598 ||||| | || || || || | | || ||| |||| | || |||| || Sbjct 5674 CGTTTTA-TTGATGAAAATCTGACTAGAGACTCCAATATTACTGCCGGAAAAGTATACCA 5616 Query 301599 AAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658 || ||| | |||| |||||||| ||| ||| || || || || |||||||| || Sbjct 5615 AACTGTTTTAAAAAAGGAACGCGATGGTTTTTATGAAGGGAAAACTGTACAAGTTGTACC 5556 Query 301659 CCACATCACCGATGAAATCAAAAGA-AGAATTCACATTGCG-GCTGAA----AAATCAGA 301712 || | || |||||||| |||| | | | || ||| || | || || | || Sbjct 5555 ACATGTTACTGATGAAATTAAAAAACATATTTTTAATTCCGCAATTAATAGTAAGGCTGA 5496 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 | | ||||| |||||||| ||||| || || ||||| ||||| | ||||||| || Sbjct 5495 TGTTATTATTACCGAAATTGGTGGAACAGTTGGTGATATTGAATCATTAGCTTTTATTGA 5436 Query 301773 AGCGATTCGTCAA 301785 ||| ||| | ||| Sbjct 5435 AGCCATTAGACAA 5423 >seq148975 Length=1539 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 798 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 742 >seq116278 Length=4427 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 3313 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 3369 >seq114190 Length=3048 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1807 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1863 >seq88750 Length=3212 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1353 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1297 >seq72905 Length=4213 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 4104 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 4048 >seq50522 Length=9031 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2093 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2037 >seq120559 Length=3671 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44260 GACTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTG 44319 || || ||| | |||||||| |||| ||||||||||||| || |||||| |||||||| Sbjct 2261 GATTCGAAACGTGATTGGGGTCATGCTATGGATTATGTAGAGGCTATGTGGATGATGTTG 2202 Query 44320 CAACAAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGAC 44379 ||| | || | | | ||| | |||||||| ||||| | ||| || || ||||| Sbjct 2201 CAATATGAAAAGCCTACCGATTTTGTTATTGCTACTGGTGAAACGCATAGCGTACGTGAA 2142 Query 44380 TTTGTA 44385 |||||| Sbjct 2141 TTTGTA 2136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044280967334930