Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq66438 212 7e-50 >seq66438 Length=2923 Score = 212 bits (234), Expect = 7e-50 Identities = 463/690 (67%), Gaps = 19/690 (3%) Strand=Plus/Plus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| || |||||||||||||| | |||| | | | | || || || || | || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462 ||| | ||||| ||||||| || |||||| ||| || || ||| |||| || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 23463 AATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACA 23522 |||| || ||| || | | |||| | |||| | ||| ||||||||||| Sbjct 1029 AATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCACA 1088 Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 ||||| |||||||| | || | ||||| || ||||| || || ||||||| || Sbjct 1089 ATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGACC 1148 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 |||||||| | |||||| || | |||||| ||| |||||| || || ||||| || Sbjct 1149 ACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACGGC 1208 Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAttttttt 23700 ||||| || | | |||| |||||| | || || | || || |||||| | | Sbjct 1209 AGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGAT--GAGATCCATGCTAGT 1266 Query 23701 GTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTT 23760 | ||||| |||||| || || || |||||||| || || ||| Sbjct 1267 GCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATT-------AAATAN 1319 Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||| | || ||| || || |||||||| || | ||||||||||| ||||| | | Sbjct 1320 TTTCCATCCTTA------ATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCACA 1373 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 ||||| || || || ||||| |||||||| || | ||||| | | ||| || || | | Sbjct 1374 TTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTGA 1433 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGA 23940 || | || | ||| |||||| |||||||||||||| || || |||||||| | | Sbjct 1434 CTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAAA 1493 Query 23941 ACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATATCTTT 23999 || | | || ||||| | ||||| || | ||| | |||||| | || ||||| Sbjct 1494 ACGTGTGATACGAAATGACGTTCAT-TGTCGGTAAGACGTACCCAATCGTCCATGTCTTT 1552 Query 24000 TGATAAATCAACTTCATCAACTGTCCAAAA 24029 || | |||||| || || || |||||||| Sbjct 1553 GGAGAGATCAACCTCTTCTACGGTCCAAAA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520293173213000