Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq128971 109 7e-19 seq183117 87.8 2e-12 seq128143 86.0 8e-12 >seq128971 Length=1653 Score = 109 bits (120), Expect = 7e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 || || ||||| | |||||| | ||||| ||||| | |||||| || | || || || Sbjct 468 TTCAATATTTGTACACGCCCTTCTTCATTTGGTAAACTAATTTCCATTTGCACCTCTAAG 527 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || ||||||| ||||| ||||| ||||| | || | ||||| ||||| || || | Sbjct 528 CGACCAGGTCGCAATAAAGCTTCATCAATCATATCACGCCTGTTAGTCATGCCAATAACC 587 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 | ||||||||| || ||| ||||| || ||||| | || ||||||||||| || | Sbjct 588 AGAATGTTGTTCAATTGTTCAACACCATCAATTTTGGCTAACAATTGATTGACCACTGTA 647 Query 156051 TCGTG 156055 ||||| Sbjct 648 TCGTG 652 Score = 100 bits (110), Expect = 4e-16 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 156177 ACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTG 156236 || || ||||| ||||| ||||||||||| | || | || ||||| ||||| || || Sbjct 915 ACATTGGCTTCAGATTCGCCCACATATTTATCCAAAATTTGTGGACCATTAACAATCTT- 973 Query 156237 ACGGGT--CGTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCAC 156293 ||| | |||| |||||| | || | |||| || ||||||| |||||||| Sbjct 974 -CGGTTCACGTGCATTTAACATGTT-ACCGATTTGTCGGGCCATTAGGGTTTTACCAGTA 1031 Query 156294 CCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCAGTTATT 156353 ||||| || || ||||||| || || || | ||||| ||||| | || ||| | | Sbjct 1032 CCAGGTGGCCCATATAACAGTATACCCTTAACGTGTTTGCAACCAAGTTGTTCGACAAGT 1091 Query 156354 TCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCC 156413 ||| |||| | || ||||| |||| ||| ||||| | |||||| |||||| Sbjct 1092 TCTGGTGGAAAGACGCGCGATGCAAAAGCTCGTCGGAAAATTGCATTAAATTCGTTATCC 1151 Query 156414 AATCCCCCCACACCCATTTCCTCAAAATTCCA 156445 || || || | |||||||| | |||| ||| Sbjct 1152 AAACCACCGATACCCATTTTGCCGAAATCCCA 1183 >seq183117 Length=3786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 50665 TACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTT---TTATCCTGTC 50721 |||| || |||||| |||| ||||||||| | | || || ||||| |||| Sbjct 3053 TACCACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAAAAATTATCTTGTC 2994 Query 50722 AATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACG 50781 ||| |||||| | || ||||| |||||| |||||||| || | |||||||| | Sbjct 2993 AATTATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAATATTGCTTCTTATG 2934 Query 50782 CTTTATTAACGTATTTGATCGCTCAAGCC-GTCGATATGAAACCGGGAGAATTTATTCAT 50840 | |||||||| || | || ||| || | ||| | | ||||||||||||||| Sbjct 2933 CATTATTAACAATAATGTTAGCACAAATATGTGGCTATCAG-CTAGGAGAATTTATTCAT 2875 Query 50841 ACGTTAGGAGACGCTCATATTTA 50863 || ||||| || ||||||||||| Sbjct 2874 ACTTTAGGTGATGCTCATATTTA 2852 >seq128143 Length=5596 Score = 86.0 bits (94), Expect = 8e-12 Identities = 222/337 (66%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| |||||||| || ||||| |||||||||||| | ||||| ||| | || | Sbjct 1590 AAGGCGATTTAGGTCCAGTTTATGGTTTTCAATGGCGTCATTTCGGATCAAAATATCGCA 1531 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 |||| | | || ||| ||||| | ||| | |||||||| | || |||| || Sbjct 1530 CTTGCAAGGATAACTACAAAGGTGAGGGCATAGATCAACTAACACAAGTTATTGATACAA 1471 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | | || || | ||||| || || ||||| | || |||||||| |||||| Sbjct 1470 TCCGTAATAATCCAAATGATCGACGCATCATAATGTCTGCATGGAATCCTGTTGATATAC 1411 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTT---ATGCCACAGACAATG 50709 |||| | ||||| || |||||| | | ||||||| ||||| || || Sbjct 1410 CACAAATGGCATTACCACCATGTCATTGTCTGGCGCAATTTTTCGTTGCCA---ACGGTG 1354 Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 |||| ||||||| || ||| | || ||||||||||| || || || ||||| Sbjct 1353 AGCTATCATGTCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATA 1294 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | ||||| || ||| | | || || |||| || || Sbjct 1293 TTGCTTCCTATGCTCTGCTTACTTACATGATTGCACA 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665546805640200