Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq450 172 1e-37 seq448 163 6e-35 >seq450 Length=3639652 Score = 172 bits (190), Expect = 1e-37 Identities = 273/385 (71%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| |||||||||||| |||||| ||||| ||||| |||||||| || |||| |||| Sbjct 785433 TTTATCAAGCATCAACTAGTGAACTTTATGGTAAAGTCCAAGAAATACCACAAAATGAAA 785492 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT-- 61201 || || || ||||| | || || |||||||| ||| | || | ||||||||| Sbjct 785493 AAACACCTTTCTATCCAAGATCGCCTTACGGTGTTGCTAAATTGTATGGTTACTGGATAG 785552 Query 61202 TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATC 61260 |||| || || || || | || ||||||| | || | | | |||| || |||| Sbjct 785553 TTGT--CAACTATCGTGAAGCATACAACATGTTTGCA-GTCAATGGTATTTTATTTAATC 785609 Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320 | || || || | |||||| | ||||| || ||||||||||| | | ||||| | Sbjct 785610 ATGAAAGCCCTAGAAGAGGTGAAACTTTTGTTACCCGTAAAATTACTAGAGGTGTTGCCA 785669 Query 61321 ATATTTTTAACGGT--GTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGA 61378 | |||| || |||| || | | || || | ||||| ||| ||||| | |||||||| Sbjct 785670 AGATTTCTATCGGTGAGTTGGACTAT--ATCGAACTAGGTAACTTAGACGCCAAAAGAGA 785727 Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438 ||||| ||||| |||||||| | || ||||||||| | ||| | || ||||| | || Sbjct 785728 CTGGGGTCATGCGAAAGATTATGTTGAAGCTATGTGGCTCATGCTTCAGCAAGACAAGCC 785787 Query 61439 AGATGACTACGTTATTGCGACTGGA 61463 || || | ||| || || |||||| Sbjct 785788 TGAAGATTTCGTGATAGCCACTGGA 785812 >seq448 Length=3678511 Score = 163 bits (180), Expect = 6e-35 Identities = 374/556 (67%), Gaps = 14/556 (3%) Strand=Plus/Plus Query 281474 ACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACG 281533 |||| ||| || ||| |||| |||||||| || | || |||||| ||||| | Sbjct 133757 ACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTCCATTAATCAATCT 133816 Query 281534 CTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGT 281593 ||||| ||| | || | ||| | ||||||||| ||||||| ||||| ||| ||||| Sbjct 133817 CTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAGTGCTCCATCCGGT 133876 Query 281594 TCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGG 281653 |||||| || | ||||||||||| | | |||| ||||| |||||| ||||||| Sbjct 133877 TCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGACATAATATTCTGG 133936 Query 281654 TTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTTATCATCTGTATCGACG 281711 ||||| | | | |||||| || | ||| | || ||||| |||||| | | Sbjct 133937 TTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGT--TCATCTAACTTGGAA 133994 Query 281712 AAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCT 281771 || | | || | || ||| ||| ||||| ||||| | ||||| ||| ||| Sbjct 133995 AATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAGCACTGGCGGCATCT 134054 Query 281772 TTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTG 281831 ||||||||||||| || | ||| || ||||| || | ||| || ||||| ||| Sbjct 134055 TTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAGATTTATGTTGTTG 134114 Query 281832 CTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGG 281891 || || || |||| ||||||| |||| ||||| | | || || |||||||| Sbjct 134115 CTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGACACTTCACCGTGA 134174 Query 281892 TGATAGGCGCTGTGTTCGG---CAACATAACCACTGAACTGTGCTACCTTCACGTCTGAT 281948 || || |||| ||||| |||| |||| ||||| ||||| || || | || Sbjct 134175 TGGTA--TGCTG-ATTCGGAGCCAACGGTACCAGCTAACTGAGCTACTTT--AGTTTCAT 134229 Query 281949 --GTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCAT 282006 |||| || ||||||||| | | || || |||| ||| ||| ||||| |||| Sbjct 134230 TCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGGTTTGAATCCAT 134289 Query 282007 CAACGACAGACGGAAT 282022 | | || || ||||| Sbjct 134290 CCATTACTGATGGAAT 134305 Score = 147 bits (162), Expect = 5e-30 Identities = 369/555 (66%), Gaps = 12/555 (2%) Strand=Plus/Minus Query 281474 ACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACG 281533 |||| ||| || ||| |||| |||||||| || | || ||||| ||||| | Sbjct 51862 ACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTCCTTTAATCAATCT 51803 Query 281534 CTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGT 281593 ||||| ||| | || | ||| | ||||||||| ||||||| ||||| ||| ||||| Sbjct 51802 CTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAGTGCTCCATCCGGT 51743 Query 281594 TCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGG 281653 |||||| || | ||||||||||| | | |||| ||||| |||||| ||||||| Sbjct 51742 TCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGACATAATATTCTGG 51683 Query 281654 TTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTTATCATCTGTATCGACG 281711 ||||| | | | |||||| || | ||| | || ||||| |||||| | | Sbjct 51682 TTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGT--TCATCTAACTTGGAA 51625 Query 281712 AAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCT 281771 || | | || | || ||| ||| ||||| ||||| | ||||| || ||| Sbjct 51624 AATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAGCACTGGCAGCATCT 51565 Query 281772 TTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTG 281831 ||||||||||||| || | ||| || ||||| || | ||| || ||||| ||| Sbjct 51564 TTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAGATTTATGTTGTTG 51505 Query 281832 CTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGG 281891 || || || |||| ||||||| |||| ||||| | | || || |||||||| Sbjct 51504 CTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGACACTTCACCGTGA 51445 Query 281892 TGATAGGCGCTGTGTTCG--GCAACATAACCACTGAACTGTGCTACCTTCACGTCTGAT- 281948 || || |||| | || |||| ||| ||||| ||||| || || | || Sbjct 51444 TGGTA--TGCTGATTCCGAACCAACGGTACCTGCTAACTGAGCTACTTT--AGTTTCATT 51389 Query 281949 -GTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 |||| || || |||||| | | || ||||||| ||| ||| ||||| ||||| Sbjct 51388 CTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCAGGTTTGAATCCATC 51329 Query 282008 AACGACAGACGGAAT 282022 | || || ||||| Sbjct 51328 CATTACTGATGGAAT 51314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057815312289830