Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq450 172 1e-37
seq448 163 6e-35
>seq450
Length=3639652
Score = 172 bits (190), Expect = 1e-37
Identities = 273/385 (71%), Gaps = 10/385 (3%)
Strand=Plus/Plus
Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143
||| |||||||||||| |||||| ||||| ||||| |||||||| || |||| ||||
Sbjct 785433 TTTATCAAGCATCAACTAGTGAACTTTATGGTAAAGTCCAAGAAATACCACAAAATGAAA 785492
Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT-- 61201
|| || || ||||| | || || |||||||| ||| | || | |||||||||
Sbjct 785493 AAACACCTTTCTATCCAAGATCGCCTTACGGTGTTGCTAAATTGTATGGTTACTGGATAG 785552
Query 61202 TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATC 61260
|||| || || || || | || ||||||| | || | | | |||| || ||||
Sbjct 785553 TTGT--CAACTATCGTGAAGCATACAACATGTTTGCA-GTCAATGGTATTTTATTTAATC 785609
Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320
| || || || | |||||| | ||||| || ||||||||||| | | ||||| |
Sbjct 785610 ATGAAAGCCCTAGAAGAGGTGAAACTTTTGTTACCCGTAAAATTACTAGAGGTGTTGCCA 785669
Query 61321 ATATTTTTAACGGT--GTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGA 61378
| |||| || |||| || | | || || | ||||| ||| ||||| | ||||||||
Sbjct 785670 AGATTTCTATCGGTGAGTTGGACTAT--ATCGAACTAGGTAACTTAGACGCCAAAAGAGA 785727
Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438
||||| ||||| |||||||| | || ||||||||| | ||| | || ||||| | ||
Sbjct 785728 CTGGGGTCATGCGAAAGATTATGTTGAAGCTATGTGGCTCATGCTTCAGCAAGACAAGCC 785787
Query 61439 AGATGACTACGTTATTGCGACTGGA 61463
|| || | ||| || || ||||||
Sbjct 785788 TGAAGATTTCGTGATAGCCACTGGA 785812
>seq448
Length=3678511
Score = 163 bits (180), Expect = 6e-35
Identities = 374/556 (67%), Gaps = 14/556 (3%)
Strand=Plus/Plus
Query 281474 ACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACG 281533
|||| ||| || ||| |||| |||||||| || | || |||||| ||||| |
Sbjct 133757 ACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTCCATTAATCAATCT 133816
Query 281534 CTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGT 281593
||||| ||| | || | ||| | ||||||||| ||||||| ||||| ||| |||||
Sbjct 133817 CTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAGTGCTCCATCCGGT 133876
Query 281594 TCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGG 281653
|||||| || | ||||||||||| | | |||| ||||| |||||| |||||||
Sbjct 133877 TCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGACATAATATTCTGG 133936
Query 281654 TTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTTATCATCTGTATCGACG 281711
||||| | | | |||||| || | ||| | || ||||| |||||| | |
Sbjct 133937 TTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGT--TCATCTAACTTGGAA 133994
Query 281712 AAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCT 281771
|| | | || | || ||| ||| ||||| ||||| | ||||| ||| |||
Sbjct 133995 AATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAGCACTGGCGGCATCT 134054
Query 281772 TTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTG 281831
||||||||||||| || | ||| || ||||| || | ||| || ||||| |||
Sbjct 134055 TTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAGATTTATGTTGTTG 134114
Query 281832 CTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGG 281891
|| || || |||| ||||||| |||| ||||| | | || || ||||||||
Sbjct 134115 CTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGACACTTCACCGTGA 134174
Query 281892 TGATAGGCGCTGTGTTCGG---CAACATAACCACTGAACTGTGCTACCTTCACGTCTGAT 281948
|| || |||| ||||| |||| |||| ||||| ||||| || || | ||
Sbjct 134175 TGGTA--TGCTG-ATTCGGAGCCAACGGTACCAGCTAACTGAGCTACTTT--AGTTTCAT 134229
Query 281949 --GTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCAT 282006
|||| || ||||||||| | | || || |||| ||| ||| ||||| ||||
Sbjct 134230 TCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGGTTTGAATCCAT 134289
Query 282007 CAACGACAGACGGAAT 282022
| | || || |||||
Sbjct 134290 CCATTACTGATGGAAT 134305
Score = 147 bits (162), Expect = 5e-30
Identities = 369/555 (66%), Gaps = 12/555 (2%)
Strand=Plus/Minus
Query 281474 ACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACG 281533
|||| ||| || ||| |||| |||||||| || | || ||||| ||||| |
Sbjct 51862 ACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTCCTTTAATCAATCT 51803
Query 281534 CTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGT 281593
||||| ||| | || | ||| | ||||||||| ||||||| ||||| ||| |||||
Sbjct 51802 CTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAGTGCTCCATCCGGT 51743
Query 281594 TCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGG 281653
|||||| || | ||||||||||| | | |||| ||||| |||||| |||||||
Sbjct 51742 TCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGACATAATATTCTGG 51683
Query 281654 TTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTTATCATCTGTATCGACG 281711
||||| | | | |||||| || | ||| | || ||||| |||||| | |
Sbjct 51682 TTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGT--TCATCTAACTTGGAA 51625
Query 281712 AAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCT 281771
|| | | || | || ||| ||| ||||| ||||| | ||||| || |||
Sbjct 51624 AATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAGCACTGGCAGCATCT 51565
Query 281772 TTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTG 281831
||||||||||||| || | ||| || ||||| || | ||| || ||||| |||
Sbjct 51564 TTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAGATTTATGTTGTTG 51505
Query 281832 CTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGG 281891
|| || || |||| ||||||| |||| ||||| | | || || ||||||||
Sbjct 51504 CTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGACACTTCACCGTGA 51445
Query 281892 TGATAGGCGCTGTGTTCG--GCAACATAACCACTGAACTGTGCTACCTTCACGTCTGAT- 281948
|| || |||| | || |||| ||| ||||| ||||| || || | ||
Sbjct 51444 TGGTA--TGCTGATTCCGAACCAACGGTACCTGCTAACTGAGCTACTTT--AGTTTCATT 51389
Query 281949 -GTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007
|||| || || |||||| | | || ||||||| ||| ||| ||||| |||||
Sbjct 51388 CTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCAGGTTTGAATCCATC 51329
Query 282008 AACGACAGACGGAAT 282022
| || || |||||
Sbjct 51328 CATTACTGATGGAAT 51314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057815312289830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |