Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq468 190 2e-43
seq453 190 2e-43
>seq468
Length=1118636
Score = 190 bits (210), Expect = 2e-43
Identities = 515/777 (66%), Gaps = 16/777 (2%)
Strand=Plus/Plus
Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852
||||| || || ||||| || || |||||| ||| | || | |||||||||||| |||
Sbjct 1106108 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 1106167
Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAAT 16911
|| || | || || || |||||| ||||| || | || || || | | || |
Sbjct 1106168 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 1106227
Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971
|| | || || || |||| | | || || |||||| | || ||| || ||
Sbjct 1106228 TCTTG-AATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 1106286
Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031
||| ||||||||||| || |||| ||||||||||||||| || || || || |||||
Sbjct 1106287 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 1106346
Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091
| || || || || | |||||| || |||||||| || || || || || ||||| ||
Sbjct 1106347 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 1106406
Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151
|| ||||||| || || |||| |||||| | | | | || | |||| ||
Sbjct 1106407 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTGCAGTCCAGTT 1106466
Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAAT 17209
|||| || || ||||| | || | ||||| || || || ||| ||
Sbjct 1106467 TATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAA 1106526
Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269
|| | | | | | || | || || || || || |||||||||||||| || |||
Sbjct 1106527 CTCCCGCTGGTCAG--GATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAG 1106584
Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329
|| | ||||| || || || ||||| || ||||| ||||| ||||| | || || | |
Sbjct 1106585 TGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA-T 1106643
Query 17330 TCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388
|||| | |||| ||| |||| |||||| || || || ||||| || | ||| ||
Sbjct 1106644 ATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAA 1106703
Query 17389 CGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445
||||| | || | || |||| || ||| || || |||| |||||| |
Sbjct 1106704 TGCCAACACATAGCTGATAAAATGACGTTCTTCATC--GT-TAAGCTTAGCCCAGTCAGT 1106760
Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505
||||||| |||| || || ||||| ||||| || || | || || |||||
Sbjct 1106761 TAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATA 1106820
Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCTAAGGATTC 17562
||| | |||||||||| || | || ||||| |||||| | | | | |||||||
Sbjct 1106821 CATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGA--TTAGGATTC 1106875
>seq453
Length=2394413
Score = 190 bits (210), Expect = 2e-43
Identities = 515/777 (66%), Gaps = 16/777 (2%)
Strand=Plus/Plus
Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852
||||| || || ||||| || || |||||| ||| | || | |||||||||||| |||
Sbjct 11560 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 11619
Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAAT 16911
|| || | || || || |||||| ||||| || | || || || | | || |
Sbjct 11620 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 11679
Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971
|| | || || || |||| | | || || |||||| | || ||| || ||
Sbjct 11680 TCTTG-AATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 11738
Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031
||| ||||||||||| || |||| ||||||||||||||| || || || || |||||
Sbjct 11739 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 11798
Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091
| || || || || | |||||| || |||||||| || || || || || ||||| ||
Sbjct 11799 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 11858
Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151
|| ||||||| || || |||| |||||| | | | | || | |||| ||
Sbjct 11859 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTGCAGTCCAGTT 11918
Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAAT 17209
|||| || || ||||| | || | ||||| || || || ||| ||
Sbjct 11919 TATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAA 11978
Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269
|| | | | | | || | || || || || || |||||||||||||| || |||
Sbjct 11979 CTCCCGCTGGTCAG--GATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAG 12036
Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329
|| | ||||| || || || ||||| || ||||| ||||| ||||| | || || | |
Sbjct 12037 TGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA-T 12095
Query 17330 TCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388
|||| | |||| ||| |||| |||||| || || || ||||| || | ||| ||
Sbjct 12096 ATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAA 12155
Query 17389 CGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445
||||| | || | || |||| || ||| || || |||| |||||| |
Sbjct 12156 TGCCAACACATAGCTGATAAAATGACGTTCTTCATC--GT-TAAGCTTAGCCCAGTCAGT 12212
Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505
||||||| |||| || || ||||| ||||| || || | || || |||||
Sbjct 12213 TAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATA 12272
Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCTAAGGATTC 17562
||| | |||||||||| || | || ||||| |||||| | | | | |||||||
Sbjct 12273 CATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGA--TTAGGATTC 12327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517541453165880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |