Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq468 190 2e-43 seq453 190 2e-43 >seq468 Length=1118636 Score = 190 bits (210), Expect = 2e-43 Identities = 515/777 (66%), Gaps = 16/777 (2%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || || ||||| || || |||||| ||| | || | |||||||||||| ||| Sbjct 1106108 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 1106167 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAAT 16911 || || | || || || |||||| ||||| || | || || || | | || | Sbjct 1106168 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 1106227 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 || | || || || |||| | | || || |||||| | || ||| || || Sbjct 1106228 TCTTG-AATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 1106286 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| ||||||||||| || |||| ||||||||||||||| || || || || ||||| Sbjct 1106287 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 1106346 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 | || || || || | |||||| || |||||||| || || || || || ||||| || Sbjct 1106347 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 1106406 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || ||||||| || || |||| |||||| | | | | || | |||| || Sbjct 1106407 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTGCAGTCCAGTT 1106466 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAAT 17209 |||| || || ||||| | || | ||||| || || || ||| || Sbjct 1106467 TATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAA 1106526 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 || | | | | | || | || || || || || |||||||||||||| || ||| Sbjct 1106527 CTCCCGCTGGTCAG--GATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAG 1106584 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || | ||||| || || || ||||| || ||||| ||||| ||||| | || || | | Sbjct 1106585 TGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA-T 1106643 Query 17330 TCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 |||| | |||| ||| |||| |||||| || || || ||||| || | ||| || Sbjct 1106644 ATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAA 1106703 Query 17389 CGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 ||||| | || | || |||| || ||| || || |||| |||||| | Sbjct 1106704 TGCCAACACATAGCTGATAAAATGACGTTCTTCATC--GT-TAAGCTTAGCCCAGTCAGT 1106760 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 ||||||| |||| || || ||||| ||||| || || | || || ||||| Sbjct 1106761 TAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATA 1106820 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCTAAGGATTC 17562 ||| | |||||||||| || | || ||||| |||||| | | | | ||||||| Sbjct 1106821 CATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGA--TTAGGATTC 1106875 >seq453 Length=2394413 Score = 190 bits (210), Expect = 2e-43 Identities = 515/777 (66%), Gaps = 16/777 (2%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || || ||||| || || |||||| ||| | || | |||||||||||| ||| Sbjct 11560 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 11619 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAAT 16911 || || | || || || |||||| ||||| || | || || || | | || | Sbjct 11620 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 11679 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 || | || || || |||| | | || || |||||| | || ||| || || Sbjct 11680 TCTTG-AATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 11738 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| ||||||||||| || |||| ||||||||||||||| || || || || ||||| Sbjct 11739 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 11798 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 | || || || || | |||||| || |||||||| || || || || || ||||| || Sbjct 11799 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 11858 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || ||||||| || || |||| |||||| | | | | || | |||| || Sbjct 11859 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTGCAGTCCAGTT 11918 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAAT 17209 |||| || || ||||| | || | ||||| || || || ||| || Sbjct 11919 TATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAA 11978 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 || | | | | | || | || || || || || |||||||||||||| || ||| Sbjct 11979 CTCCCGCTGGTCAG--GATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAG 12036 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || | ||||| || || || ||||| || ||||| ||||| ||||| | || || | | Sbjct 12037 TGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA-T 12095 Query 17330 TCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 |||| | |||| ||| |||| |||||| || || || ||||| || | ||| || Sbjct 12096 ATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAA 12155 Query 17389 CGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 ||||| | || | || |||| || ||| || || |||| |||||| | Sbjct 12156 TGCCAACACATAGCTGATAAAATGACGTTCTTCATC--GT-TAAGCTTAGCCCAGTCAGT 12212 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 ||||||| |||| || || ||||| ||||| || || | || || ||||| Sbjct 12213 TAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATA 12272 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCTAAGGATTC 17562 ||| | |||||||||| || | || ||||| |||||| | | | | ||||||| Sbjct 12273 CATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGA--TTAGGATTC 12327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541453165880