Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq468 172 6e-38
seq453 172 6e-38
seq476 93.3 4e-14
seq444 86.0 6e-12
>seq468
Length=1118636
Score = 172 bits (190), Expect = 6e-38
Identities = 383/572 (67%), Gaps = 2/572 (0%)
Strand=Plus/Plus
Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248
|||||| | | ||| || || || ||||||| |||||| |||| ||||||||||||
Sbjct 1106266 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 1106325
Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA 16308
|| |||||||| |||||||| || || || || | ||| || || || || || ||
Sbjct 1106326 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 1106385
Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368
|| || || || ||||| |||||| ||||||| || || |||| ||| || | | |
Sbjct 1106386 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC 1106445
Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428
| ||| | |||| || | ||||||| || ||||| | ||| | ||
Sbjct 1106446 TGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGT 1106505
Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488
||| || || || || | ||| | | | ||| | || || || || |||||
Sbjct 1106506 TTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAG 1106565
Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548
|| |||||||| || ||||| | ||||| || || || ||||| ||||| || |||||
Sbjct 1106566 TAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCG 1106625
Query 16549 AGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607
||| || | || || | | |||| | ||||| ||| || | || ||||| || ||||
Sbjct 1106626 AGCTTCGGTAATCTGGA-TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATAC 1106684
Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667
|||| |||| || || ||||| | | | || |||| ||| ||| |||
Sbjct 1106685 CGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAA 1106744
Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727
| || ||| || |||||||| |||| || || ||||| ||||| || |
Sbjct 1106745 GCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGG 1106804
Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCA 16759
| | || || |||||||||| ||||||||||
Sbjct 1106805 CTTCAGCTTTCTTATACATTTCCCAAATATCA 1106836
>seq453
Length=2394413
Score = 172 bits (190), Expect = 6e-38
Identities = 383/572 (67%), Gaps = 2/572 (0%)
Strand=Plus/Plus
Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248
|||||| | | ||| || || || ||||||| |||||| |||| ||||||||||||
Sbjct 11718 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 11777
Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA 16308
|| |||||||| |||||||| || || || || | ||| || || || || || ||
Sbjct 11778 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 11837
Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368
|| || || || ||||| |||||| ||||||| || || |||| ||| || | | |
Sbjct 11838 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC 11897
Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428
| ||| | |||| || | ||||||| || ||||| | ||| | ||
Sbjct 11898 TGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGT 11957
Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488
||| || || || || | ||| | | | ||| | || || || || |||||
Sbjct 11958 TTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAG 12017
Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548
|| |||||||| || ||||| | ||||| || || || ||||| ||||| || |||||
Sbjct 12018 TAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCG 12077
Query 16549 AGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607
||| || | || || | | |||| | ||||| ||| || | || ||||| || ||||
Sbjct 12078 AGCTTCGGTAATCTGGA-TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATAC 12136
Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667
|||| |||| || || ||||| | | | || |||| ||| ||| |||
Sbjct 12137 CGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAA 12196
Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727
| || ||| || |||||||| |||| || || ||||| ||||| || |
Sbjct 12197 GCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGG 12256
Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCA 16759
| | || || |||||||||| ||||||||||
Sbjct 12257 CTTCAGCTTTCTTATACATTTCCCAAATATCA 12288
Score = 95.1 bits (104), Expect = 1e-14
Identities = 185/273 (68%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTC----CATGCTCTGTCGTGGAG 118991
|||||||||||||| |||||||| | ||||| ||| ||| || ||| || |
Sbjct 2274581 TTCATGTATCGTATTTTTCCAAAGAT----CGCTCTTTCACCCCATCCTTGGTCATGTAT 2274636
Query 118992 TCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTA 119051
|| | || | ||| ||||| || ||| | || || ||||| || ||||| || |
Sbjct 2274637 ACCCCCAACGGACCAGAGACAGCCTACGAAACCATTTGGATCGCGACCATCTAATTCAAA 2274696
Query 119052 CTTATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAG 119111
|| || ||||| |||||| || | || |||||||| ||||||||||| ||
Sbjct 2274697 TTTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCTTCCGGAGATTTACTCCATTCTAG 2274756
Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171
||| ||||||||||| ||||| | | || || || | |||| | ||| || || ||
Sbjct 2274757 TATCTTTTTAGCCCAATACATTCTCATGTAACCATGAAGTTTAGCATCGCGAACCAATTG 2274816
Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204
| || | ||||| |||||||| || ||
Sbjct 2274817 CATCTGACAAGCATTCCACAGAGGATCATGAGT 2274849
>seq476
Length=723144
Score = 93.3 bits (102), Expect = 4e-14
Identities = 223/334 (67%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTC----CATGCTCTGTCGTGGAG 118991
|||||||||||||| |||||||| | ||||| ||| ||| || ||| || |
Sbjct 1555 TTCATGTATCGTATTTTTCCAAAGAT----CGCTCTTTCACCCCATCCTTGGTCATGTAT 1610
Query 118992 TCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTA 119051
|| | || | ||| ||||| || ||| | || || ||||| || |||| ||| |
Sbjct 1611 ACCCCCAACGGACCAGAGACAGCCTACGAAACCATTTGGATCACGACCATCTAGTTCGAA 1670
Query 119052 CTTATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAG 119111
|| || ||||| |||||| || | || ||| |||| ||||||||||| ||
Sbjct 1671 ATTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCTTCGGGAGATTTACTCCATTCAAG 1730
Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171
||| ||||||||||| ||||| | | || || || | |||| | ||| || || ||
Sbjct 1731 TATCTTTTTAGCCCAATACATTCTCATGTAACCATGAAGTTTAGCATCGCGAACCAATTG 1790
Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTCTAAACT-AGACGTAT 119230
| || | ||||| |||||||| || || ||| ||| ||||| | ||
Sbjct 1791 CATCTGACAAGCATTCCACAGAGGATCATGCGTTTTACCGTCTTC-AAACTCTTTCTTAG 1849
Query 119231 CGTATAGATAGGGTCGTAAATCCTGTCGATGATC 119264
||| | ||| || ||| ||| | |||||||||
Sbjct 1850 TGTACACATAAGGACGTTTATCTTTTCGATGATC 1883
>seq444
Length=5217058
Score = 86.0 bits (94), Expect = 6e-12
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 13508 CTACTTTTTCAAAAATTATCTGTGCTACCTTATCTCCTTTTTTAACATAGTA-TGTGTCT 13566
||| ||||||| |||||| ||| || | |||||||||||||||| | | | | || |
Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAAT 5155763
Query 13567 TTTCCGTTATTAATGAGTATGATTCCTACATTCCCTCTGTAATCTCTATCTATAACCCCG 13626
| ||| ||| | | || | ||| ||||| ||||||||||| || ||||| ||
Sbjct 5155762 CT-CCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCT 5155704
Query 13627 CCACCTACGTCAATGGAGAATTTCAACGACAAACCAGATCGTGGGGCGATCCTGCCATAA 13686
| || || ||||| || ||| | | || ||||||||||| || || || ||||||
Sbjct 5155703 GCTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAA 5155644
Query 13687 CATCCTTCGGG 13697
|| || || ||
Sbjct 5155643 CAACCATCTGG 5155633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511410302292120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |