Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq468 172 6e-38 seq453 172 6e-38 seq476 93.3 4e-14 seq444 86.0 6e-12 >seq468 Length=1118636 Score = 172 bits (190), Expect = 6e-38 Identities = 383/572 (67%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 |||||| | | ||| || || || ||||||| |||||| |||| |||||||||||| Sbjct 1106266 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 1106325 Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA 16308 || |||||||| |||||||| || || || || | ||| || || || || || || Sbjct 1106326 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 1106385 Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368 || || || || ||||| |||||| ||||||| || || |||| ||| || | | | Sbjct 1106386 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC 1106445 Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 | ||| | |||| || | ||||||| || ||||| | ||| | || Sbjct 1106446 TGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGT 1106505 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 ||| || || || || | ||| | | | ||| | || || || || ||||| Sbjct 1106506 TTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAG 1106565 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 || |||||||| || ||||| | ||||| || || || ||||| ||||| || ||||| Sbjct 1106566 TAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCG 1106625 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 ||| || | || || | | |||| | ||||| ||| || | || ||||| || |||| Sbjct 1106626 AGCTTCGGTAATCTGGA-TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATAC 1106684 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 |||| |||| || || ||||| | | | || |||| ||| ||| ||| Sbjct 1106685 CGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAA 1106744 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | || ||| || |||||||| |||| || || ||||| ||||| || | Sbjct 1106745 GCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGG 1106804 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCA 16759 | | || || |||||||||| |||||||||| Sbjct 1106805 CTTCAGCTTTCTTATACATTTCCCAAATATCA 1106836 >seq453 Length=2394413 Score = 172 bits (190), Expect = 6e-38 Identities = 383/572 (67%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 |||||| | | ||| || || || ||||||| |||||| |||| |||||||||||| Sbjct 11718 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 11777 Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA 16308 || |||||||| |||||||| || || || || | ||| || || || || || || Sbjct 11778 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 11837 Query 16309 CCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC 16368 || || || || ||||| |||||| ||||||| || || |||| ||| || | | | Sbjct 11838 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC 11897 Query 16369 ATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 | ||| | |||| || | ||||||| || ||||| | ||| | || Sbjct 11898 TGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGT 11957 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 ||| || || || || | ||| | | | ||| | || || || || ||||| Sbjct 11958 TTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAG 12017 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 || |||||||| || ||||| | ||||| || || || ||||| ||||| || ||||| Sbjct 12018 TAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCG 12077 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 ||| || | || || | | |||| | ||||| ||| || | || ||||| || |||| Sbjct 12078 AGCTTCGGTAATCTGGA-TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATAC 12136 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 |||| |||| || || ||||| | | | || |||| ||| ||| ||| Sbjct 12137 CGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAA 12196 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | || ||| || |||||||| |||| || || ||||| ||||| || | Sbjct 12197 GCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGG 12256 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCA 16759 | | || || |||||||||| |||||||||| Sbjct 12257 CTTCAGCTTTCTTATACATTTCCCAAATATCA 12288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTC----CATGCTCTGTCGTGGAG 118991 |||||||||||||| |||||||| | ||||| ||| ||| || ||| || | Sbjct 2274581 TTCATGTATCGTATTTTTCCAAAGAT----CGCTCTTTCACCCCATCCTTGGTCATGTAT 2274636 Query 118992 TCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTA 119051 || | || | ||| ||||| || ||| | || || ||||| || ||||| || | Sbjct 2274637 ACCCCCAACGGACCAGAGACAGCCTACGAAACCATTTGGATCGCGACCATCTAATTCAAA 2274696 Query 119052 CTTATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAG 119111 || || ||||| |||||| || | || |||||||| ||||||||||| || Sbjct 2274697 TTTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCTTCCGGAGATTTACTCCATTCTAG 2274756 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 ||| ||||||||||| ||||| | | || || || | |||| | ||| || || || Sbjct 2274757 TATCTTTTTAGCCCAATACATTCTCATGTAACCATGAAGTTTAGCATCGCGAACCAATTG 2274816 Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 | || | ||||| |||||||| || || Sbjct 2274817 CATCTGACAAGCATTCCACAGAGGATCATGAGT 2274849 >seq476 Length=723144 Score = 93.3 bits (102), Expect = 4e-14 Identities = 223/334 (67%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTC----CATGCTCTGTCGTGGAG 118991 |||||||||||||| |||||||| | ||||| ||| ||| || ||| || | Sbjct 1555 TTCATGTATCGTATTTTTCCAAAGAT----CGCTCTTTCACCCCATCCTTGGTCATGTAT 1610 Query 118992 TCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTA 119051 || | || | ||| ||||| || ||| | || || ||||| || |||| ||| | Sbjct 1611 ACCCCCAACGGACCAGAGACAGCCTACGAAACCATTTGGATCACGACCATCTAGTTCGAA 1670 Query 119052 CTTATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAG 119111 || || ||||| |||||| || | || ||| |||| ||||||||||| || Sbjct 1671 ATTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCTTCGGGAGATTTACTCCATTCAAG 1730 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 ||| ||||||||||| ||||| | | || || || | |||| | ||| || || || Sbjct 1731 TATCTTTTTAGCCCAATACATTCTCATGTAACCATGAAGTTTAGCATCGCGAACCAATTG 1790 Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTCTAAACT-AGACGTAT 119230 | || | ||||| |||||||| || || ||| ||| ||||| | || Sbjct 1791 CATCTGACAAGCATTCCACAGAGGATCATGCGTTTTACCGTCTTC-AAACTCTTTCTTAG 1849 Query 119231 CGTATAGATAGGGTCGTAAATCCTGTCGATGATC 119264 ||| | ||| || ||| ||| | ||||||||| Sbjct 1850 TGTACACATAAGGACGTTTATCTTTTCGATGATC 1883 >seq444 Length=5217058 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 13508 CTACTTTTTCAAAAATTATCTGTGCTACCTTATCTCCTTTTTTAACATAGTA-TGTGTCT 13566 ||| ||||||| |||||| ||| || | |||||||||||||||| | | | | || | Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAAT 5155763 Query 13567 TTTCCGTTATTAATGAGTATGATTCCTACATTCCCTCTGTAATCTCTATCTATAACCCCG 13626 | ||| ||| | | || | ||| ||||| ||||||||||| || ||||| || Sbjct 5155762 CT-CCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCT 5155704 Query 13627 CCACCTACGTCAATGGAGAATTTCAACGACAAACCAGATCGTGGGGCGATCCTGCCATAA 13686 | || || ||||| || ||| | | || ||||||||||| || || || |||||| Sbjct 5155703 GCTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAA 5155644 Query 13687 CATCCTTCGGG 13697 || || || || Sbjct 5155643 CAACCATCTGG 5155633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410302292120