Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq443 156 3e-33 >seq443 Length=6836010 Score = 156 bits (172), Expect = 3e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 101701 ATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATG 101760 ||| || || ||||| || || ||| || |||||||||||| ||| || || ||||| Sbjct 505576 ATAAATATGTGCATCACCAATTTGATGAATGAACTCTCCAGGCTCTAAGTTTGTAACATG 505635 Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 || ||||| |||||||| ||| ||||| |||| || ||||| |||||||| ||||| Sbjct 505636 TGCGATCATATGAGTTAAAATAGAGTAGCTGGCAACATTGAATGGTACTCCTAAACCCAT 505695 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACT 101880 ||| ||||||||||| | ||| ||||||| | || |||||| |||||||||||| Sbjct 505696 ATCTGCTGATCTTTGGTCGAGTCGACAGGACAATTTACCATCAGTTACATAAAATTGAAA 505755 Query 101881 TAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 || |||||| || ||||| |||| |||||| ||| ||| Sbjct 505756 CAAACAATGACATGGAGGCAATGCCATGAAAGGAATATCTTAAA 505799 Score = 118 bits (130), Expect = 8e-22 Identities = 236/348 (68%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 101919 CTGAAACATTCCAAGCAC--ACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGT 101976 ||| |||||||||||||| ||| ||| ||||| || | || || | ||| || | Sbjct 505854 CTGCAACATTCCAAGCACTAACAATAAGT--CTTCTGTCGTTTGGATTCGATTTGATTTT 505911 Query 101977 ATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTT 102036 ||||| | | ||| || ||||||| |||| || ||||| || | | Sbjct 505912 TTCAATAACATTTTTCAACTGGTCAATACCTTGACCAGAATAATTTGTATTTGCATCAAT 505971 Query 102037 ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATC 102096 ||||| || || |||| | ||| ||||| ||||| | ||| || | ||||||||| || Sbjct 505972 ATATTTGGCACCCCAATGTCGCCATTGAAACCCATAAATAGGACCTAAATCTCCTTCTTC 506031 Query 102097 TCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 ||| || | ||||||| |||||||||| | | |||||||| ||||||||||| || Sbjct 506032 TCTATCTGAGAAACCAACAGAATCTAAAAATTCTTTCGATCCATTAGCATCCCAAATATG 506091 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTC 102216 || || | || | |||||||| || ||| | || ||||||| ||||| Sbjct 506092 AACTCCTTTTTCTTGCAATATTTTGCTGTTTGTTTCCCCTTTAATGAACCACAGAAGTTC 506151 Query 102217 TTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 || | || |||| |||| || | ||||| || |||||||| || Sbjct 506152 CTCCAACACTCCTCGAAAAAAAACACGTTTAGTTGTAAAAAGTGGTAA 506199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248377837891