Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq442 607 1e-168
seq468 271 9e-68
seq453 271 9e-68
>seq442
Length=7801961
Score = 607 bits (672), Expect = 1e-168
Identities = 1234/1813 (68%), Gaps = 37/1813 (2%)
Strand=Plus/Plus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888
|| ||||| | |||| |||||||| || || || || || || ||| || || |||
Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685
Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948
||||| || | ||| | | | || | | | ||| ||||| | ||||||||||
Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745
Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008
||||| || || ||||| | || |||||||||| | || | ||||| |||||||||
Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805
Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGAT 53065
|||| |||| ||| | | |||||||||| ||||| | | | | ||||| ||
Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865
Query 53066 CCACCATCTACCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124
|| | | |||||| | |||| | || || |||||||| | || || || || ||
Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924
Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184
| || | | ||||| | ||||||||||||||||| ||||| | |||| ||||| ||
Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984
Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244
|| ||||| ||||| ||||| | ||| || || || |||||||| ||||||||||||||
Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044
Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 53302
|| ||||| || || | || | ||| |||| |||||| ||||| | ||||||
Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102
Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362
|| || | ||| | ||| |||| || ||| || ||| | |
Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162
Query 53363 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 53422
|| || ||| ||| |||||| |||| || ||||| ||||| | ||||| ||
Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222
Query 53423 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 53482
|||||||| || || | || || ||||| || || || ||||| | ||| | |
Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282
Query 53483 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 53542
| ||||| |||| ||||||||||| | | | || ||| ||||||||||| ||||||
Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342
Query 53543 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 53601
|| || | || ||||||| || | || || || || || |||| | ||||||
Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401
Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTT 53658
| | || || || |||||||| || | |||| |||| ||||| || || ||
Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458
Query 53659 CAGTTTGAGAAAATCAAATT---GTCCATCTATTACAAACATGTTCAATGCAATAGATGC 53715
||| | ||||||||||| || | || | ||||| | ||||| || ||||| ||
Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518
Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775
||||||||||| || || |||| || | ||||| | || |||||||| |||||
Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578
Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835
||||||||||||||| | ||||| ||||| ||||| ||||| ||| |||||
Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638
Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895
||| || | || ||||||||| ||||||| || || || |||| ||| | | ||
Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698
Query 53896 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCAA 53954
||| |||||| |||||||| |||||| ||| ||| ||| || | | | |
Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757
Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014
| || ||||| |||| | | | |||||||||| | |||||||| | ||||
Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817
Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074
| | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | ||
Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877
Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 54132
||| | ||| || || || || || || ||| ||||| || ||||| | | |
Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935
Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 54191
||||| |||||| || || | || || | ||||| |||| || ||||| || || |
Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAG-CATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991
Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251
| | | || | ||| | | |||| | | | ||| ||| || | | ||||| ||
Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051
Query 54252 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 54309
|||||| ||||| ||| | |||| | || |||||| | || |||| ||||
Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109
Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369
|| || || || |||||| || || || ||| || ||||| | || || ||
Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169
Query 54370 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428
|||||||| ||| |||| | ||| |||||||| ||||| | || | ||| || |
Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228
Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488
| |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| |
Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288
Query 54489 TCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548
||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| |
Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348
Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608
| || || |||||||| | || || ||||| || | ||| ||| ||||||| ||||
Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408
Query 54609 TAAAACCAAAATA 54621
| |||||||||||
Sbjct 3253409 TGAAACCAAAATA 3253421
>seq468
Length=1118636
Score = 271 bits (300), Expect = 9e-68
Identities = 546/801 (68%), Gaps = 9/801 (1%)
Strand=Plus/Plus
Query 23952 AATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTC 24011
|||||| | |||||| ||||| |||||||| || ||| |||||||| |||
Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155
Query 24012 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 24071
|||||||| || |||||| | ||| | || | ||||| || || || || ||
Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215
Query 24072 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129
||| | || |||| | ||| |||||||||| | | | || |||||| |
Sbjct 1106216 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273
Query 24130 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189
|||||| || ||||| || |||| || || |||| | || | |||||| || || |
Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333
Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249
| | || ||||| ||||||||||||||||||||||| || | || || || || || |
Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCA 24308
| || || ||||| || ||||||||||| | |||||| || || | | | ||
Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 1106453
Query 24309 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366
| | | |||| ||| ||||| || ||||| | ||||| || | || || ||||
Sbjct 1106454 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 1106513
Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426
| || || ||| | | | | | ||| | | || || || |||| || || |
Sbjct 1106514 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 1106573
Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486
|||| || || || | || ||||| || |||||||| || || ||||||| ||| ||||
Sbjct 1106574 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 1106633
Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546
||||||| | || | ||||| ||| |||||||||||||| || || ||||| ||
Sbjct 1106634 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 1106693
Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 24605
| | || || ||||| |||| | ||||||| ||| || | || | || ||| |
Sbjct 1106694 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 1106752
Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665
|| ||| | | |||| ||||| || || ||||| || ||||| || || || || ||
Sbjct 1106753 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 1106812
Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|| |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| |||
Sbjct 1106813 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 1106872
Query 24726 TTTTTTGCAAGGATTGGTTCC 24746
|| | | ||| | |||||||
Sbjct 1106873 TTCTCTCGAAGTAATGGTTCC 1106893
>seq453
Length=2394413
Score = 271 bits (300), Expect = 9e-68
Identities = 546/801 (68%), Gaps = 9/801 (1%)
Strand=Plus/Plus
Query 23952 AATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTC 24011
|||||| | |||||| ||||| |||||||| || ||| |||||||| |||
Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607
Query 24012 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 24071
|||||||| || |||||| | ||| | || | ||||| || || || || ||
Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667
Query 24072 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129
||| | || |||| | ||| |||||||||| | | | || |||||| |
Sbjct 11668 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725
Query 24130 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189
|||||| || ||||| || |||| || || |||| | || | |||||| || || |
Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785
Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249
| | || ||||| ||||||||||||||||||||||| || | || || || || || |
Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCA 24308
| || || ||||| || ||||||||||| | |||||| || || | | | ||
Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 11905
Query 24309 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366
| | | |||| ||| ||||| || ||||| | ||||| || | || || ||||
Sbjct 11906 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 11965
Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426
| || || ||| | | | | | ||| | | || || || |||| || || |
Sbjct 11966 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 12025
Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486
|||| || || || | || ||||| || |||||||| || || ||||||| ||| ||||
Sbjct 12026 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 12085
Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546
||||||| | || | ||||| ||| |||||||||||||| || || ||||| ||
Sbjct 12086 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 12145
Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 24605
| | || || ||||| |||| | ||||||| ||| || | || | || ||| |
Sbjct 12146 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 12204
Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665
|| ||| | | |||| ||||| || || ||||| || ||||| || || || || ||
Sbjct 12205 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 12264
Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|| |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| |||
Sbjct 12265 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 12324
Query 24726 TTTTTTGCAAGGATTGGTTCC 24746
|| | | ||| | |||||||
Sbjct 12325 TTCTCTCGAAGTAATGGTTCC 12345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593716842805680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |