Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq442 607 1e-168 seq468 271 9e-68 seq453 271 9e-68 >seq442 Length=7801961 Score = 607 bits (672), Expect = 1e-168 Identities = 1234/1813 (68%), Gaps = 37/1813 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| | |||| |||||||| || || || || || || ||| || || ||| Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| || | ||| | | | || | | | ||| ||||| | |||||||||| Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || ||||| | || |||||||||| | || | ||||| ||||||||| Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGAT 53065 |||| |||| ||| | | |||||||||| ||||| | | | | ||||| || Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865 Query 53066 CCACCATCTACCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 || | | |||||| | |||| | || || |||||||| | || || || || || Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | || | | ||||| | ||||||||||||||||| ||||| | |||| ||||| || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 || ||||| ||||| ||||| | ||| || || || |||||||| |||||||||||||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 53302 || ||||| || || | || | ||| |||| |||||| ||||| | |||||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 || || | ||| | ||| |||| || ||| || ||| | | Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162 Query 53363 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 53422 || || ||| ||| |||||| |||| || ||||| ||||| | ||||| || Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222 Query 53423 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 53482 |||||||| || || | || || ||||| || || || ||||| | ||| | | Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282 Query 53483 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 53542 | ||||| |||| ||||||||||| | | | || ||| ||||||||||| |||||| Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342 Query 53543 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 53601 || || | || ||||||| || | || || || || || |||| | |||||| Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401 Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTT 53658 | | || || || |||||||| || | |||| |||| ||||| || || || Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458 Query 53659 CAGTTTGAGAAAATCAAATT---GTCCATCTATTACAAACATGTTCAATGCAATAGATGC 53715 ||| | ||||||||||| || | || | ||||| | ||||| || ||||| || Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518 Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775 ||||||||||| || || |||| || | ||||| | || |||||||| ||||| Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578 Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835 ||||||||||||||| | ||||| ||||| ||||| ||||| ||| ||||| Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638 Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895 ||| || | || ||||||||| ||||||| || || || |||| ||| | | || Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698 Query 53896 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCAA 53954 ||| |||||| |||||||| |||||| ||| ||| ||| || | | | | Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 | || ||||| |||| | | | |||||||||| | |||||||| | |||| Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074 | | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | || Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877 Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 54132 ||| | ||| || || || || || || ||| ||||| || ||||| | | | Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 54191 ||||| |||||| || || | || || | ||||| |||| || ||||| || || | Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAG-CATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991 Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251 | | | || | ||| | | |||| | | | ||| ||| || | | ||||| || Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051 Query 54252 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 54309 |||||| ||||| ||| | |||| | || |||||| | || |||| |||| Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || || |||||| || || || ||| || ||||| | || || || Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169 Query 54370 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 |||||||| ||| |||| | ||| |||||||| ||||| | || | ||| || | Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| | Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288 Query 54489 TCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| | Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348 Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608 | || || |||||||| | || || ||||| || | ||| ||| ||||||| |||| Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408 Query 54609 TAAAACCAAAATA 54621 | ||||||||||| Sbjct 3253409 TGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 271 bits (300), Expect = 9e-68 Identities = 546/801 (68%), Gaps = 9/801 (1%) Strand=Plus/Plus Query 23952 AATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTC 24011 |||||| | |||||| ||||| |||||||| || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 24012 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 24071 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 24072 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 1106216 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273 Query 24130 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189 |||||| || ||||| || |||| || || |||| | || | |||||| || || | Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333 Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249 | | || ||||| ||||||||||||||||||||||| || | || || || || || | Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCA 24308 | || || ||||| || ||||||||||| | |||||| || || | | | || Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 1106453 Query 24309 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | | | |||| ||| ||||| || ||||| | ||||| || | || || |||| Sbjct 1106454 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 1106513 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || || ||| | | | | | ||| | | || || || |||| || || | Sbjct 1106514 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 1106573 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || | || ||||| || |||||||| || || ||||||| ||| |||| Sbjct 1106574 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 1106633 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 ||||||| | || | ||||| ||| |||||||||||||| || || ||||| || Sbjct 1106634 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 1106693 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 24605 | | || || ||||| |||| | ||||||| ||| || | || | || ||| | Sbjct 1106694 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 1106752 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || ||| | | |||| ||||| || || ||||| || ||||| || || || || || Sbjct 1106753 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 1106812 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| ||| Sbjct 1106813 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 1106872 Query 24726 TTTTTTGCAAGGATTGGTTCC 24746 || | | ||| | ||||||| Sbjct 1106873 TTCTCTCGAAGTAATGGTTCC 1106893 >seq453 Length=2394413 Score = 271 bits (300), Expect = 9e-68 Identities = 546/801 (68%), Gaps = 9/801 (1%) Strand=Plus/Plus Query 23952 AATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTC 24011 |||||| | |||||| ||||| |||||||| || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 24012 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 24071 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 24072 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 11668 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725 Query 24130 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189 |||||| || ||||| || |||| || || |||| | || | |||||| || || | Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785 Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249 | | || ||||| ||||||||||||||||||||||| || | || || || || || | Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCA 24308 | || || ||||| || ||||||||||| | |||||| || || | | | || Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 11905 Query 24309 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | | | |||| ||| ||||| || ||||| | ||||| || | || || |||| Sbjct 11906 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 11965 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || || ||| | | | | | ||| | | || || || |||| || || | Sbjct 11966 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 12025 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || | || ||||| || |||||||| || || ||||||| ||| |||| Sbjct 12026 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 12085 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 ||||||| | || | ||||| ||| |||||||||||||| || || ||||| || Sbjct 12086 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 12145 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 24605 | | || || ||||| |||| | ||||||| ||| || | || | || ||| | Sbjct 12146 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 12204 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || ||| | | |||| ||||| || || ||||| || ||||| || || || || || Sbjct 12205 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 12264 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| ||| Sbjct 12265 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 12324 Query 24726 TTTTTTGCAAGGATTGGTTCC 24746 || | | ||| | ||||||| Sbjct 12325 TTCTCTCGAAGTAATGGTTCC 12345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716842805680