Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq444 127 2e-24 seq468 114 1e-20 seq453 114 1e-20 >seq444 Length=5217058 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || |||||||||||| | || || ||| | || Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||| | ||||| || || ||||| | || || Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || |||||||| || || | || ||||| ||||||||| Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || | ||| |||| || || Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACG 3541585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| || || || || ||||| || | || || ||| | | Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | || ||||| | || | ||||| | |||||||| || ||||| | |||| Sbjct 3541968 TGATACTATTGAAAACG-TGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACC 3541910 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| ||| || |||||||| || |||| || || |||| || || | Sbjct 3541909 AACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATA 3541850 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || || || || | || || || | || ||||| Sbjct 3541849 ATATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCG 3541813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || |||||||||||| | || || ||| | | Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | || || | ||||| || || ||||| | || || Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || |||||||| || || | || ||||| | ||| |||||| Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || || ||| | || || || Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCA 3542401 >seq468 Length=1118636 Score = 114 bits (126), Expect = 1e-20 Identities = 480/753 (64%), Gaps = 6/753 (1%) Strand=Plus/Minus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 ||||| || | || || || || ||| ||||| || || || || || ||||||||| Sbjct 1106853 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 1106794 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGC-GCTTGAACGACAA 116733 || || || ||||| ||| | || || | ||||||| |||| ||||| | Sbjct 1106793 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTT-AACGATGA 1106735 Query 116734 CGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAA 116793 || || ||||| |||| | ||| |||| || ||| | ||| ||||| || || || Sbjct 1106734 AGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAA 1106675 Query 116794 CGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTA 116853 || ||| | | || | || || || | ||| | |||| || || || || || Sbjct 1106674 TGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 1106615 Query 116854 CGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGAC 116911 || ||||| || || || ||||| |||||||| || ||||| | || || || ||| Sbjct 1106614 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTA--CAGCCTACTGATAGAC 1106557 Query 116912 ACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG 116971 || ||| | | | | || || | | | || || || || || || | || Sbjct 1106556 ACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCA 1106497 Query 116972 TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTC 117031 || || | ||||| || ||||| | ||||| || | | | | || Sbjct 1106496 TGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTT 1106437 Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 | ||| | || | ||||| || || || || |||| || || ||| ||||||| Sbjct 1106436 GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCC 1106377 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || |||||||| || || || ||||| ||||| || | |||||| ||||| || Sbjct 1106376 GCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTT 1106317 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG 117211 ||||| | || || || | ||||| || |||||||||||| | || || || | || Sbjct 1106316 ATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTT 1106257 Query 117212 CAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAG 117271 | ||||||| | | || || || || || || | ||||||||| Sbjct 1106256 AAAAGACCGAGTGAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAG 1106197 Query 117272 CGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCG 117331 || | ||||| || |||| || ||| | ||| | || | ||| |||| | Sbjct 1106196 AAATTTTTAACCGAGGCATTGCCAGTTTCTCTCATAGGAATGAACAACAAAATGATGGCC 1106137 Query 117332 CAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 |||||||| ||||| || || ||||| ||||| Sbjct 1106136 CAATACATTGAGTTTGTTGCAGACAGATTGCTG 1106104 >seq453 Length=2394413 Score = 114 bits (126), Expect = 1e-20 Identities = 480/753 (64%), Gaps = 6/753 (1%) Strand=Plus/Minus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 ||||| || | || || || || ||| ||||| || || || || || ||||||||| Sbjct 12305 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 12246 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGC-GCTTGAACGACAA 116733 || || || ||||| ||| | || || | ||||||| |||| ||||| | Sbjct 12245 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTT-AACGATGA 12187 Query 116734 CGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAA 116793 || || ||||| |||| | ||| |||| || ||| | ||| ||||| || || || Sbjct 12186 AGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAA 12127 Query 116794 CGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTA 116853 || ||| | | || | || || || | ||| | |||| || || || || || Sbjct 12126 TGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 12067 Query 116854 CGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGAC 116911 || ||||| || || || ||||| |||||||| || ||||| | || || || ||| Sbjct 12066 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTA--CAGCCTACTGATAGAC 12009 Query 116912 ACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG 116971 || ||| | | | | || || | | | || || || || || || | || Sbjct 12008 ACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCA 11949 Query 116972 TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTC 117031 || || | ||||| || ||||| | ||||| || | | | | || Sbjct 11948 TGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTT 11889 Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 | ||| | || | ||||| || || || || |||| || || ||| ||||||| Sbjct 11888 GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCC 11829 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || |||||||| || || || ||||| ||||| || | |||||| ||||| || Sbjct 11828 GCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTT 11769 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG 117211 ||||| | || || || | ||||| || |||||||||||| | || || || | || Sbjct 11768 ATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTT 11709 Query 117212 CAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAG 117271 | ||||||| | | || || || || || || | ||||||||| Sbjct 11708 AAAAGACCGAGTGAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAG 11649 Query 117272 CGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCG 117331 || | ||||| || |||| || ||| | ||| | || | ||| |||| | Sbjct 11648 AAATTTTTAACCGAGGCATTGCCAGTTTCTCTCATAGGAATGAACAACAAAATGATGGCC 11589 Query 117332 CAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 |||||||| ||||| || || ||||| ||||| Sbjct 11588 CAATACATTGAGTTTGTTGCAGACAGATTGCTG 11556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215071806160