Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq453 170 3e-37 seq476 156 6e-33 seq443 141 1e-28 seq444 129 9e-25 >seq453 Length=2394413 Score = 170 bits (188), Expect = 3e-37 Identities = 213/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 |||||||| | | | || ||||||||| |||| |||| ||||| ||||| || | |||| Sbjct 2274554 TCAAATTTTCTTTTGCAACCTTCATAATTCATGTATCGTATTTTTCCAAAGATCGCTCTT 2274613 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || |||| || ||||| ||||| | || ||||| | ||| || || | |||||| Sbjct 2274614 TCACCCCATCCTTGGTCATGTATACCCCCAACGGACCAGAGACAGCCTACGAAACCATTT 2274673 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCT 202942 ||||| || ||||||| | |||| |||||||||| | ||||||| Sbjct 2274674 GGATCGCGACCATCTAATTCAAATTTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCT 2274733 Query 202943 TCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGC 203002 || || ||||| ||||||||| ||| |||||||||||||||||||| | || ||||| Sbjct 2274734 TCCGGAGATTTACTCCATTCTAGTATCTTTTTAGCCCAATACATTCTCATGTAACCATGA 2274793 Query 203003 ATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 | |||| ||| | || || ||| | || | |||||||| | | ||||||||| Sbjct 2274794 AGTTTAGCATCGCGAACCAATTGCATCTGACAAGCATTCCACAGAGGATCATGAGTT 2274850 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/235 (67%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 ||||||| ||| | ||| || | | ||| || || | ||| |||||| | |||||| Sbjct 2285426 TCATGAACACCTCCAATGGAAAAGAGACAGCCTACGAAACCACATGGATCGCAACCATCT 2285485 Query 202898 ATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTC 202957 | | |||| | |||||||| | ||||||||| || |||| || Sbjct 2285486 AATTCAAATTTGTTATTTAAATAGATAGCGATTTCCAGTGCTTCTTCCGGAGATTCACTC 2285545 Query 202958 CATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATA 203017 ||||||| ||| |||||||||||||||||||| | || ||||| | ||| ||| | | Sbjct 2285546 CATTCTAGTATCTTTTTAGCCCAATACATTCTCATGTAGCCATGAAGCTTAGCATCGCGA 2285605 Query 203018 ATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAA 203072 | || ||| | || | ||||| | | | ||||||||| ||| ||||| Sbjct 2285606 ACCAATTGCATCTGACAAGCATTGTACAGAGGATCATGAGTTTTACCATCTTCAA 2285660 >seq476 Length=723144 Score = 156 bits (172), Expect = 6e-33 Identities = 210/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 |||||||| | | | || ||||||||| |||| |||| ||||| ||||| || | |||| Sbjct 1528 TCAAATTTTCTTTTGCAACCTTCATAATTCATGTATCGTATTTTTCCAAAGATCGCTCTT 1587 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || |||| || ||||| ||||| | || ||||| | ||| || || | |||||| Sbjct 1588 TCACCCCATCCTTGGTCATGTATACCCCCAACGGACCAGAGACAGCCTACGAAACCATTT 1647 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCT 202942 |||||||| ||||||| | || |||||||||| | ||||||| Sbjct 1648 GGATCACGACCATCTAGTTCGAAATTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCT 1707 Query 202943 TCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGC 203002 || || ||||| ||||||| | ||| |||||||||||||||||||| | || ||||| Sbjct 1708 TCGGGAGATTTACTCCATTCAAGTATCTTTTTAGCCCAATACATTCTCATGTAACCATGA 1767 Query 203003 ATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 | |||| ||| | || || ||| | || | |||||||| | | ||||| ||| Sbjct 1768 AGTTTAGCATCGCGAACCAATTGCATCTGACAAGCATTCCACAGAGGATCATGCGTT 1824 >seq443 Length=6836010 Score = 141 bits (156), Expect = 1e-28 Identities = 163/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 205374 TCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGG 205433 ||| | || |||||| ||| |||||||||| |||||| | |||||| || || || Sbjct 505558 TCCCTCAACATGATTCTTATAAATATGTGCATCACCAATTTGATGAATGAACTCTCCAGG 505617 Query 205434 TTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAA 205493 | ||| || || | |||||| ||||||| ||| || | | || || |||||||| || Sbjct 505618 CTCTAAGTTTGTAACATGTGCGATCATATGAGTTAAAATAGAGTAGCTGGCAACATTGAA 505677 Query 205494 TGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATT 205553 |||||| |||||||||||||| ||||||||||| | | | |||| | | ||||| Sbjct 505678 TGGTACTCCTAAACCCATATCTGCTGATCTTTGGTCGAGTCGACAGGACA---ATTTACC 505734 Query 205554 ATTAATTACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || | |||||| |||||| | ||||||||||| || || Sbjct 505735 ATCAGTTACATAAAATTGAAACAAACAATGACATGGAGG 505773 Score = 136 bits (150), Expect = 6e-27 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 205662 TTTTATTTTATTTATAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC 205721 ||| ||||| | |||| || | | || || |||| |||||| | ||||||||||| Sbjct 505903 TTTGATTTTTTCAATAACATTTTTCAACTGGTCAATACCTTGACCAGAATAATTTGTATT 505962 Query 205722 CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATC 205781 |||||||||||| ||||| |||| ||||||||||| ||||||| ||||||||||| Sbjct 505963 TGCATCAATATATTTGGCACCCCAATGTCGCCATTGAAACCCATAAATAGGACCTAAATC 506022 Query 205782 ACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatc 205841 ||||||| |||||| |||||| | || | ||| | |||||||| |||| Sbjct 506023 TCCTTCTTCTCTATCTGAGAAACCAACAGAATCTAAAAATTCTTTCGATCCATTAGCATC 506082 Query 205842 ccaaatatggattcctttattttttagaatattt 205875 ||||||||| | ||||| ||| || ||||||| Sbjct 506083 CCAAATATGAACTCCTT--TTTCTTGCAATATTT 506114 >seq444 Length=5217058 Score = 129 bits (142), Expect = 9e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| || || || || || || || || | ||| ||||| | Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | ||| ||||| ||||| ||||||||||| |||||||| || Sbjct 3541968 TGATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCA 3541909 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || ||||| | ||||| |||| || | |||||||| Sbjct 3541908 ACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAA 3541849 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||||||| || | || ||||| || || | || |||||||| ||| || Sbjct 3541848 TATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGGTATGCAAATTT 3541790 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| || || | || ||||| | Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| || ||||| || |||||||||||| Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || ||||| | |||||| ||||||| | || || || Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| |||||||||||||| ||||| || ||||| | || |||||| Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGGT 3541572 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || ||||| || || | ||| ||||| || Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| || |||||||| ||||| |||||| Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || ||||| | || ||| | || || | ||||| || Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || || | || ||||| ||||| | || |||||||| ||| || Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGGTATGCAAATTT 3542366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| || ||| | || ||||| | Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||| || || || |||||||| || || || ||| Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || ||||||||| | || ||| | || |||||| ||||||||| Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAAT 3542196 Query 124719 ATTCAAAAAG 124728 || ||||||| Sbjct 3542195 ATCCAAAAAG 3542186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755449946908800