Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq444 161 9e-35
>seq444
Length=5217058
Score = 161 bits (178), Expect = 9e-35
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || || |||||||| | ||||||||||||||||||||||||||||
Sbjct 3542375 TACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGC 3542434
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| || || ||| || |||||||| |||||| |||| | |||||| |||||||| |
Sbjct 3542435 TCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTG 3542494
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || || ||||||||| || || |||||| | ||| | ||||||| || | ||
Sbjct 3542495 GGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGT-TCA 3542553
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| | ||| | ||||| || || ||||| || || ||||| ||||||
Sbjct 3542554 ACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATG 3542604
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || ||| |||||||| | ||||| ||||||||||| || ||||| |
Sbjct 3541799 TACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCAC 3541858
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||| || |||||||||||||| |||||| |||| | ||| || || || || |
Sbjct 3541859 TGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTG 3541918
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || || |||||| ||||| ||| || | ||| | || || | || |
Sbjct 3541919 GGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAA 3541978
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || || || || ||||||||||| ||||| |||||
Sbjct 3541979 CCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | || || || || || | || || ||||| ||||||||||| ||
Sbjct 3541572 ACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGA 3541631
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| || || |||||| |||||||| |||||| ||||||||||||| ||||| || ||
Sbjct 3541632 AAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGG 3541691
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||||||| ||||| || || | ||| | |||||| | || ||
Sbjct 3541692 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 3541751
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | ||| | ||||| || || || ||||| || ||||| |||||
Sbjct 3541752 TTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827010835572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |