Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq476 167 4e-36
seq453 158 2e-33
seq448 96.9 6e-15
>seq476
Length=723144
Score = 167 bits (184), Expect = 4e-36
Identities = 218/299 (73%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494
|||| ||||||||||| ||||| || | || ||||| |||| | || | ||| | |
Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766
Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554
|| ||| | |||||||||||||||| |||||||||||||||| || | | || ||||
Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706
Query 189555 ACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCT 189613
| || || | || | ||||||||| || |||| | ||||||||| || |||||
Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647
Query 189614 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 189673
|| || | |||||| ||| | ||||| || | || |||| || || ||| |||
Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587
Query 189674 AGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 189732
||| |||| |||||||| ||| |||| ||||||||||| ||| || | ||||||||
Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528
>seq453
Length=2394413
Score = 158 bits (174), Expect = 2e-33
Identities = 216/299 (72%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494
|||||||||||||||| ||||| || | || ||||| |||| | || | ||| | |
Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792
Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554
|| ||| | |||||||||||||||| |||||||| ||||||| || | | || ||||
Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732
Query 189555 ACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCT 189613
| || || | || | ||||||||| || |||| | ||| |||| || |||||
Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673
Query 189614 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 189673
|| || | |||||| ||| | ||||| || | || |||| || || ||| |||
Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613
Query 189674 AGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 189732
||| |||| |||||||| ||| |||| ||||||||||| ||| || | ||||||||
Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554
>seq448
Length=3678511
Score = 96.9 bits (106), Expect = 6e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 135622 TGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTT 135681
|||||| |||| |||||||||||||||| || ||||| | | |||||| ||| || |
Sbjct 3038974 TGGAAACAAATGTCCGATCCTGTTTTGCACATTGAACTCCGTAAATGGGCTGATATTATG 3038915
Query 135682 ATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAAT 135741
| || | || || || ||||| ||||| ||||| || |||||| || |||||
Sbjct 3038914 TTGATTTCTCCATTGGATGCTAATACTTTAGCCAAAATCTCTTCTGGTATTTGTGATAAC 3038855
Query 135742 TTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCA 135801
||| | || | ||| | | ||||||||| | || || | | || ||||| |
Sbjct 3038854 TTATTAACTTGTATAGCCCGTGCCTGGGATCTGCAAAAGCCTTTATTATTTTGTCCATCT 3038795
Query 135802 ATGAATACTCTTATGTGGGAACATCC 135827
||||| || | ||||||||||||||
Sbjct 3038794 ATGAACACATTCATGTGGGAACATCC 3038769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923189402885640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |