Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq476 167 4e-36 seq453 158 2e-33 seq448 96.9 6e-15 >seq476 Length=723144 Score = 167 bits (184), Expect = 4e-36 Identities = 218/299 (73%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494 |||| ||||||||||| ||||| || | || ||||| |||| | || | ||| | | Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766 Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554 || ||| | |||||||||||||||| |||||||||||||||| || | | || |||| Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706 Query 189555 ACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCT 189613 | || || | || | ||||||||| || |||| | ||||||||| || ||||| Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647 Query 189614 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 189673 || || | |||||| ||| | ||||| || | || |||| || || ||| ||| Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587 Query 189674 AGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 189732 ||| |||| |||||||| ||| |||| ||||||||||| ||| || | |||||||| Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528 >seq453 Length=2394413 Score = 158 bits (174), Expect = 2e-33 Identities = 216/299 (72%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494 |||||||||||||||| ||||| || | || ||||| |||| | || | ||| | | Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792 Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554 || ||| | |||||||||||||||| |||||||| ||||||| || | | || |||| Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732 Query 189555 ACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCT 189613 | || || | || | ||||||||| || |||| | ||| |||| || ||||| Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673 Query 189614 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 189673 || || | |||||| ||| | ||||| || | || |||| || || ||| ||| Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613 Query 189674 AGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 189732 ||| |||| |||||||| ||| |||| ||||||||||| ||| || | |||||||| Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554 >seq448 Length=3678511 Score = 96.9 bits (106), Expect = 6e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 135622 TGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTT 135681 |||||| |||| |||||||||||||||| || ||||| | | |||||| ||| || | Sbjct 3038974 TGGAAACAAATGTCCGATCCTGTTTTGCACATTGAACTCCGTAAATGGGCTGATATTATG 3038915 Query 135682 ATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAAT 135741 | || | || || || ||||| ||||| ||||| || |||||| || ||||| Sbjct 3038914 TTGATTTCTCCATTGGATGCTAATACTTTAGCCAAAATCTCTTCTGGTATTTGTGATAAC 3038855 Query 135742 TTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCA 135801 ||| | || | ||| | | ||||||||| | || || | | || ||||| | Sbjct 3038854 TTATTAACTTGTATAGCCCGTGCCTGGGATCTGCAAAAGCCTTTATTATTTTGTCCATCT 3038795 Query 135802 ATGAATACTCTTATGTGGGAACATCC 135827 ||||| || | |||||||||||||| Sbjct 3038794 ATGAACACATTCATGTGGGAACATCC 3038769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923189402885640