Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq451 120 5e-22
seq444 120 5e-22
>seq451
Length=2993488
Score = 120 bits (132), Expect = 5e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 10407 AAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCT 10466
|||||||||||| | |||||||| || ||||| | |||| | || || ||||
Sbjct 1199726 AAAACTGATTTACAACTTCAAATTCCTGCTGGCTGTTACGGAAGAATCGCGCCACGATCC 1199785
Query 10467 GATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGA 10526
| |||||||| || | | ||| ||| | |||||||| || | |||| ||||||| ||
Sbjct 1199786 GGATTAGCTCTCAAACATTCTATCGATGTAGGAGCTGGTGTTGTCGACGCAGATTATCGA 1199845
Query 10527 GGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGA 10586
|||||||| ||||| || ||||| ||| | | ||||| ||| | |||| | ||||
Sbjct 1199846 GGAAATGTTGGAGTTATCTTATTCAATTTTGGAGACGAAGAGTTTCAAGTAAACAAAGGA 1199905
Query 10587 GATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCC 10627
|| ||||| ||||| | || || |||| ||| ||||||
Sbjct 1199906 GACAGAATCGCTCAACTTATCTGCGAAAGAATCGCATATCC 1199946
>seq444
Length=5217058
Score = 120 bits (132), Expect = 5e-22
Identities = 158/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 10404 ATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGA 10463
|| ||||||||| || ||| || | || | || ||||||| ||| | ||||| ||
Sbjct 5155606 ATTAAAACTGATCTACAGATACAAGTGCCAGATGGTTGTTATGGTAGAATTGCTCCACGA 5155665
Query 10464 TCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTAT 10523
|||| |||||||| || | | |||||| ||||||| || || ||||||| |||||
Sbjct 5155666 TCTGGATTAGCTCTTAAACATTCGATTGATGTTGGAGCAGGTGTTATTGACGCTGATTAC 5155725
Query 10524 AGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAA--TGAAGATTTTATAATAAATA 10581
||||| ||||| ||||| || || || ||| ||| | | |||||| | | || |
Sbjct 5155726 AGAGGTAATGTTGGAGTTATCTTGTTCAAT--TTCGGAGATTCAGATTTCCAAGTTAAAA 5155783
Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618
|||||||||||| |||| |||| |||||||||||
Sbjct 5155784 AAGGAGATAGAATTGCTCAGCTAATTTGTGAAAAAAT 5155820
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||||| |||||| ||||||||||| |||||||| || || || || |||
Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || | ||||| ||||| || || | | || ||||| || ||
Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || |||||
Sbjct 3541693 ATTCCTTCCTTGTCTTG 3541709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743520442494720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |