Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq451 120 5e-22 seq444 120 5e-22 >seq451 Length=2993488 Score = 120 bits (132), Expect = 5e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 10407 AAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCT 10466 |||||||||||| | |||||||| || ||||| | |||| | || || |||| Sbjct 1199726 AAAACTGATTTACAACTTCAAATTCCTGCTGGCTGTTACGGAAGAATCGCGCCACGATCC 1199785 Query 10467 GATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGA 10526 | |||||||| || | | ||| ||| | |||||||| || | |||| ||||||| || Sbjct 1199786 GGATTAGCTCTCAAACATTCTATCGATGTAGGAGCTGGTGTTGTCGACGCAGATTATCGA 1199845 Query 10527 GGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGA 10586 |||||||| ||||| || ||||| ||| | | ||||| ||| | |||| | |||| Sbjct 1199846 GGAAATGTTGGAGTTATCTTATTCAATTTTGGAGACGAAGAGTTTCAAGTAAACAAAGGA 1199905 Query 10587 GATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCC 10627 || ||||| ||||| | || || |||| ||| |||||| Sbjct 1199906 GACAGAATCGCTCAACTTATCTGCGAAAGAATCGCATATCC 1199946 >seq444 Length=5217058 Score = 120 bits (132), Expect = 5e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 10404 ATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGA 10463 || ||||||||| || ||| || | || | || ||||||| ||| | ||||| || Sbjct 5155606 ATTAAAACTGATCTACAGATACAAGTGCCAGATGGTTGTTATGGTAGAATTGCTCCACGA 5155665 Query 10464 TCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTAT 10523 |||| |||||||| || | | |||||| ||||||| || || ||||||| ||||| Sbjct 5155666 TCTGGATTAGCTCTTAAACATTCGATTGATGTTGGAGCAGGTGTTATTGACGCTGATTAC 5155725 Query 10524 AGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAA--TGAAGATTTTATAATAAATA 10581 ||||| ||||| ||||| || || || ||| ||| | | |||||| | | || | Sbjct 5155726 AGAGGTAATGTTGGAGTTATCTTGTTCAAT--TTCGGAGATTCAGATTTCCAAGTTAAAA 5155783 Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 |||||||||||| |||| |||| ||||||||||| Sbjct 5155784 AAGGAGATAGAATTGCTCAGCTAATTTGTGAAAAAAT 5155820 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| |||||| ||||||||||| |||||||| || || || || ||| Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||| ||||| || || | | || ||||| || || Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 3541693 ATTCCTTCCTTGTCTTG 3541709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743520442494720