Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq468 221 1e-52
seq453 221 1e-52
>seq468
Length=1118636
Score = 221 bits (244), Expect = 1e-52
Identities = 518/770 (67%), Gaps = 10/770 (1%)
Strand=Plus/Plus
Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111
||||| | || ||||| || || ||||| || || || || ||| | | ||||
Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155
Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171
|||||||| | ||| || | ||| || |||||||| || | || || | || ||
Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215
Query 16172 TCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAG-TGTTTAAACA 16229
|| | ||| ||| | | || | | ||| || | ||| || || | |||||| |
Sbjct 1106216 TCTCGCACTATTTCT-TGAATA-ATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273
Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289
| ||| |||||||||||||| |||||||| || | | || | ||||| || || |
Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333
Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349
| | ||||||||| || || || ||||||| |||||| |||||||| || || || || |
Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393
Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409
| || ||||||||||| ||||| |||| ||||| || | | | | |
Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 1106453
Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTAT 16467
|| | |||| ||| | ||||| | || ||||| |||||| | || ||| || ||
Sbjct 1106454 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACA-GTT-TCAAT 1106511
Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527
|| || || | | | | | | ||| || ||||| ||||| |||| ||
Sbjct 1106512 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 1106571
Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587
||||| || || || | |||||| || || || |||||||||||||| |||| ||||||
Sbjct 1106572 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 1106631
Query 16588 GGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646
|| || || | ||| || | ||| ||||| ||||| ||||| || || || || ||
Sbjct 1106632 GGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTG 1106690
Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706
|| | || || || | | | | ||||||| ||| | ||| ||| ||
Sbjct 1106691 AGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAG 1106750
Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
|||||||| |||||| ||||| || |||||||| |||||||| || || || |||
Sbjct 1106751 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 1106810
Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
| || |||||||||| ||| || || || ||||||| |||||||||
Sbjct 1106811 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACA 1106860
>seq453
Length=2394413
Score = 221 bits (244), Expect = 1e-52
Identities = 518/770 (67%), Gaps = 10/770 (1%)
Strand=Plus/Plus
Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111
||||| | || ||||| || || ||||| || || || || ||| | | ||||
Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607
Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171
|||||||| | ||| || | ||| || |||||||| || | || || | || ||
Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667
Query 16172 TCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAG-TGTTTAAACA 16229
|| | ||| ||| | | || | | ||| || | ||| || || | |||||| |
Sbjct 11668 TCTCGCACTATTTCT-TGAATA-ATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725
Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289
| ||| |||||||||||||| |||||||| || | | || | ||||| || || |
Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785
Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349
| | ||||||||| || || || ||||||| |||||| |||||||| || || || || |
Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845
Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409
| || ||||||||||| ||||| |||| ||||| || | | | | |
Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 11905
Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTAT 16467
|| | |||| ||| | ||||| | || ||||| |||||| | || ||| || ||
Sbjct 11906 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACA-GTT-TCAAT 11963
Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527
|| || || | | | | | | ||| || ||||| ||||| |||| ||
Sbjct 11964 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 12023
Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587
||||| || || || | |||||| || || || |||||||||||||| |||| ||||||
Sbjct 12024 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 12083
Query 16588 GGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646
|| || || | ||| || | ||| ||||| ||||| ||||| || || || || ||
Sbjct 12084 GGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTG 12142
Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706
|| | || || || | | | | ||||||| ||| | ||| ||| ||
Sbjct 12143 AGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAG 12202
Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
|||||||| |||||| ||||| || |||||||| |||||||| || || || |||
Sbjct 12203 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 12262
Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
| || |||||||||| ||| || || || ||||||| |||||||||
Sbjct 12263 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACA 12312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462508294122600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |