Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq468 221 1e-52 seq453 221 1e-52 >seq468 Length=1118636 Score = 221 bits (244), Expect = 1e-52 Identities = 518/770 (67%), Gaps = 10/770 (1%) Strand=Plus/Plus Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111 ||||| | || ||||| || || ||||| || || || || ||| | | |||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171 |||||||| | ||| || | ||| || |||||||| || | || || | || || Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 16172 TCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAG-TGTTTAAACA 16229 || | ||| ||| | | || | | ||| || | ||| || || | |||||| | Sbjct 1106216 TCTCGCACTATTTCT-TGAATA-ATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273 Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289 | ||| |||||||||||||| |||||||| || | | || | ||||| || || | Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333 Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349 | | ||||||||| || || || ||||||| |||||| |||||||| || || || || | Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 | || ||||||||||| ||||| |||| ||||| || | | | | | Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 1106453 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTAT 16467 || | |||| ||| | ||||| | || ||||| |||||| | || ||| || || Sbjct 1106454 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACA-GTT-TCAAT 1106511 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527 || || || | | | | | | ||| || ||||| ||||| |||| || Sbjct 1106512 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 1106571 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||| || || || | |||||| || || || |||||||||||||| |||| |||||| Sbjct 1106572 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 1106631 Query 16588 GGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 || || || | ||| || | ||| ||||| ||||| ||||| || || || || || Sbjct 1106632 GGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTG 1106690 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706 || | || || || | | | | ||||||| ||| | ||| ||| || Sbjct 1106691 AGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAG 1106750 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 |||||||| |||||| ||||| || |||||||| |||||||| || || || ||| Sbjct 1106751 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 1106810 Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 | || |||||||||| ||| || || || ||||||| ||||||||| Sbjct 1106811 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACA 1106860 >seq453 Length=2394413 Score = 221 bits (244), Expect = 1e-52 Identities = 518/770 (67%), Gaps = 10/770 (1%) Strand=Plus/Plus Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111 ||||| | || ||||| || || ||||| || || || || ||| | | |||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171 |||||||| | ||| || | ||| || |||||||| || | || || | || || Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 16172 TCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT-AATAAG-TGTTTAAACA 16229 || | ||| ||| | | || | | ||| || | ||| || || | |||||| | Sbjct 11668 TCTCGCACTATTTCT-TGAATA-ATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725 Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289 | ||| |||||||||||||| |||||||| || | | || | ||||| || || | Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785 Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349 | | ||||||||| || || || ||||||| |||||| |||||||| || || || || | Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 | || ||||||||||| ||||| |||| ||||| || | | | | | Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 11905 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTAT 16467 || | |||| ||| | ||||| | || ||||| |||||| | || ||| || || Sbjct 11906 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACA-GTT-TCAAT 11963 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527 || || || | | | | | | ||| || ||||| ||||| |||| || Sbjct 11964 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 12023 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||| || || || | |||||| || || || |||||||||||||| |||| |||||| Sbjct 12024 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 12083 Query 16588 GGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 || || || | ||| || | ||| ||||| ||||| ||||| || || || || || Sbjct 12084 GGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTG 12142 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706 || | || || || | | | | ||||||| ||| | ||| ||| || Sbjct 12143 AGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAG 12202 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 |||||||| |||||| ||||| || |||||||| |||||||| || || || ||| Sbjct 12203 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 12262 Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 | || |||||||||| ||| || || || ||||||| ||||||||| Sbjct 12263 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACA 12312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508294122600