Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq443 167 2e-36 >seq443 Length=6836010 Score = 167 bits (184), Expect = 2e-36 Identities = 290/416 (70%), Gaps = 7/416 (2%) Strand=Plus/Minus Query 19971 AAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAA 20030 ||||| |||||| ||||| |||||| | || || ||||| || ||| ||| || || Sbjct 506275 AAAAATAGATCGCACCGGCGTTGGAACCATTTCAGTTTTTGGCATCCAAAATCGTTACAA 506216 Query 20031 CTTGAGAAATGAATTT---CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGT 20087 |||| | ||| || | || | || || || ||||| || |||| ||| || | Sbjct 506215 TTTGAAAGATGGATGTTTACCACTTTTTACAACTAAACGTGTTTTTTTTCGAGGAGTGTT 506156 Query 20088 TGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTA-GAAAAAG 20146 || || | | ||||| |||||||| |||||| | | ||| | ||||||| Sbjct 506155 GGAGGAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAA-ATATTGCAAGAAAAAG 506097 Query 20147 GAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA 20206 ||||| | |||||| || ||||||| || |||||||| | ||| ||| || Sbjct 506096 GAGTTCATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGG-TTTCTCA 506038 Query 20207 -ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCT 20265 | | |||| || ||||| |||||| | ||||| ||||||||| |||||| || || Sbjct 506037 GATAGAGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCC 505978 Query 20266 GAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTT 20325 ||||| |||| || |||||||||| ||| ||||| | || || || |||||||| Sbjct 505977 AAATATATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTTGAAAAATGTT 505918 Query 20326 ATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 ||| | ||| ||| |||| ||||||||||||||| ||||| | | || ||||| Sbjct 505917 ATTGAAAAAATCAAATCGAATCCAAACGACAGAAGACTTATTGTTAGTGCTTGGAA 505862 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446 ||||| | ||||| ||||| ||||||||||||||| | | |||||||| || || Sbjct 505796 AAGATATTCCTTTCATGGCATTGCCTCCATGTCATTGTTTGTTTCAATTTTATGTAACTG 505737 Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 || | ||||||| |||| | | | ||| |||| || |||||||| | || || || | Sbjct 505736 ATGGTAAATTGTCCTGTCGACTCGACCAAAGATCAGCAGATATGGGTTTAGGAGTACCAT 505677 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 ||||| |||| || || | | | || ||||||| |||||||||||| | ||| | Sbjct 505676 TCAATGTTGCCAGCTACTCTATTTTAACTCATATGATCGCACATGTTACAAACTTAGAGC 505617 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTA 20606 | || || || | || || || || || |||||||| Sbjct 505616 CTGGAGAGTTCATTCATCAAATTGGTGATGCACATATTTA 505577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180881499745