Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq468 235 5e-57
seq453 235 5e-57
>seq468
Length=1118636
Score = 235 bits (260), Expect = 5e-57
Identities = 435/633 (69%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 14188 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 14247
|| |||||| | ||||| |||||||||||||| | || ||||||| | ||||||||
Sbjct 1106263 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 1106322
Query 14248 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 14307
||| || || ||||| |||||||||| || || ||||| | |||||| || || |||||
Sbjct 1106323 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 1106382
Query 14308 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14367
|| || || || || || || ||||| ||||| || || |||| ||| |||| ||
Sbjct 1106383 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 1106442
Query 14368 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14427
|| | || | |||| ||| | |||||||||| |||| || | | |
Sbjct 1106443 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502
Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||||||| || || | | ||| || | || | ||||| || || ||
Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 1106562
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
|||| ||| ||||| |||||||| | || || || || || |||||||||||||||||
Sbjct 1106563 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 1106622
Query 14548 TCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14606
|| |||||| | || | || || | ||||||||| || ||||||||||| || |
Sbjct 1106623 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 1106681
Query 14607 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC 14666
|||| || || | || |||||||| | | | ||||| | | ||||||| |
Sbjct 1106682 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 1106741
Query 14667 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14726
| || || ||| || | |||||| ||| | || || || ||||| ||||| ||
Sbjct 1106742 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 1106801
Query 14727 TAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14786
|| ||||||| ||||||||| |||| || || ||| ||||| || || ||||
Sbjct 1106802 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 1106861
Query 14787 ATC-TTGAAGATGTTTCTTTAAGAATTGGTTCC 14818
| | | | ||| | ||| ||| | |||||||
Sbjct 1106862 AACGATTAGGAT-TCTCTCGAAGTAATGGTTCC 1106893
Score = 89.7 bits (98), Expect = 5e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970
||||||||||||||| ||| ||||| || || ||||| |||||||| |||| || || |
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 13971 TTTCCATAAAATCAAATGGATT 13992
||||||||||||||||||||
Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970
>seq453
Length=2394413
Score = 235 bits (260), Expect = 5e-57
Identities = 435/633 (69%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 14188 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 14247
|| |||||| | ||||| |||||||||||||| | || ||||||| | ||||||||
Sbjct 11715 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 11774
Query 14248 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 14307
||| || || ||||| |||||||||| || || ||||| | |||||| || || |||||
Sbjct 11775 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 11834
Query 14308 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14367
|| || || || || || || ||||| ||||| || || |||| ||| |||| ||
Sbjct 11835 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 11894
Query 14368 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14427
|| | || | |||| ||| | |||||||||| |||| || | | |
Sbjct 11895 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954
Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||||||| || || | | ||| || | || | ||||| || || ||
Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 12014
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
|||| ||| ||||| |||||||| | || || || || || |||||||||||||||||
Sbjct 12015 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 12074
Query 14548 TCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14606
|| |||||| | || | || || | ||||||||| || ||||||||||| || |
Sbjct 12075 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 12133
Query 14607 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC 14666
|||| || || | || |||||||| | | | ||||| | | ||||||| |
Sbjct 12134 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 12193
Query 14667 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14726
| || || ||| || | |||||| ||| | || || || ||||| ||||| ||
Sbjct 12194 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 12253
Query 14727 TAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14786
|| ||||||| ||||||||| |||| || || ||| ||||| || || ||||
Sbjct 12254 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 12313
Query 14787 ATC-TTGAAGATGTTTCTTTAAGAATTGGTTCC 14818
| | | | ||| | ||| ||| | |||||||
Sbjct 12314 AACGATTAGGAT-TCTCTCGAAGTAATGGTTCC 12345
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970
||||||||||||| | ||| ||||| || || ||||| |||||||| |||| || || |
Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400
Query 13971 TTTCCATAAAATCAAATGGATT 13992
||||||||||||||||||||
Sbjct 11401 GATCCATAAAATCAAATGGATT 11422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482341735205880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |