Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq442 232 6e-56
seq444 152 5e-32
>seq442
Length=7801961
Score = 232 bits (256), Expect = 6e-56
Identities = 934/1466 (64%), Gaps = 26/1466 (2%)
Strand=Plus/Plus
Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163
|||| || || ||||| || || || ||||| || ||||| | || | || |||||||
Sbjct 3251594 TCTTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGC 3251653
Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223
| ||||| || || | || ||| | || ||||| ||||| |||| ||| || | |
Sbjct 3251654 CTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAG 3251713
Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283
| || | | | ||| || || ||||| ||||| ||||| ||||| || || || |
Sbjct 3251714 GTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAG 3251773
Query 22284 CCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342
|||| | | | || | || |||||||| || || |||| |||| | ||
Sbjct 3251774 CCATTTCCAGAATATTTTTTTGAGGA-ATTTCCCAAACAGTTCGATACAATTGCTTAATA 3251832
Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402
|| || || ||| || || | ||| || | | | || ||| | | |
Sbjct 3251833 TCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTC 3251892
Query 22403 ATCGTATCGTTCCACAAACC--GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460
|| || ||||| | | ||| | |||||||||||||| ||||| |||| || |
Sbjct 3251893 ATGTCTTCATTCCAAAGTTCTCGAT--CAGTCAAATCTTTGACAAGATGGTGGTTAACTA 3251950
Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520
||||||| || || || | || || || || ||||| ||| | ||||| | ||
Sbjct 3251951 CTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAG 3252010
Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580
|||| ||||| |||| |||||||| || || || || ||||| ||||| || | ||
Sbjct 3252011 ATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGAC 3252070
Query 22581 AGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640
||||| | || || || | |||||||||||| ||| | |||||||||||||| |
Sbjct 3252071 TGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAG 3252130
Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700
| || || ||| |||||||||| |||||||| | || | || || |||
Sbjct 3252131 ATGGTGTTACA---CCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTG 3252187
Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760
| || |||||||| || || | | || || || || || || || | || || |
Sbjct 3252188 CATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCAT 3252247
Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820
|||| || ||||| ||||||| ||||||| || | ||| || | || |
Sbjct 3252248 AATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAATGG-A 3252306
Query 22821 TA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879
|| | ||| | | || ||||| || | || ||||| |||| || || ||||| ||
Sbjct 3252307 TATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTC 3252366
Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939
|| || || || || | |||||| | || || || || ||||
Sbjct 3252367 TTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGTTT 3252426
Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999
|| |||| || || ||| || | |||| || ||| |
Sbjct 3252427 AAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATC--AAA----TTTT 3252480
Query 23000 TGTAC------AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053
||| | |||||| || || | ||| || ||||||||||| || || || || ||
Sbjct 3252481 TGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCA 3252540
Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113
|| || | || || |||||||| || || ||||| |||||| || || || | |
Sbjct 3252541 TCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGA 3252600
Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173
|| |||| ||| ||| ||| || ||| || || ||||| ||||| || ||
Sbjct 3252601 TTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTT 3252660
Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC 23233
|| | ||| | || ||||| ||| |||| | || |||| | | | | |||
Sbjct 3252661 TCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTAT 3252720
Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293
|| |||||| || || || || | | | ||||| | || ||| |||
Sbjct 3252721 CTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATCTCCATAAACTTCGAAT 3252780
Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353
|| || || ||| |||||||| |||||||||||| || |||| ||| || |
Sbjct 3252781 AGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCC 3252840
Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413
|||||||||| || | ||| ||||| | |||| || || || | || ||| |||||
Sbjct 3252841 ATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTA 3252900
Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473
|| ||||| ||| | || | || || || || || |||||||| ||||| | |||
Sbjct 3252901 CCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAA 3252960
Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533
| ||| | || || |||| ||| || || || | ||| ||||| || | | ||
Sbjct 3252961 ATAGCATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAGCAGATTCATTA 3253017
Query 23534 TACACTCTTAGCATCGGCACGAGACC 23559
||| | | ||||| |||||||||||
Sbjct 3253018 AACATTTTCAGCATAGGCACGAGACC 3253043
>seq444
Length=5217058
Score = 152 bits (168), Expect = 5e-32
Identities = 176/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||||||||| |||||||| || || ||||| |||||| | || |||||||| ||
Sbjct 3542604 CATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATC 3542545
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | |||| || ||| | || ||||||||||| | || ||||| ||
Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||||| | || |||||||| |||||| | ||||| | | | || |||||||||| |
Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGA-TGGACGTACCCTGAGCGATTACA 3542426
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTA-GACTGAGGGGCGGTA 31421
||||||||||||| || || ||||| |||| |||| |||| | || ||||
Sbjct 3542425 ACATTCAAAAAGAGTCTACCCTTCACTTGGT-CTTACGACTTCGTGGTGGTA 3542375
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||||||||| ||||| || || || || || || | || |||||||| ||
Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | |||| || ||| | ||| ||||| ||||| | || || |||||
Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| |||||| | || ||| | ||| | || ||||||||
Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|||||||||||||| || ||||| ||||
Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGT 3541819
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || || || || ||||| |||||| | || |||||||| |||
Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| ||||| | ||| ||||||||||| | || || || ||
Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| |||||| | || || | || | || || |||
Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||| |||||||| ||| | ||| | ||| | ||||
Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACT 3541582
Score = 98.7 bits (108), Expect = 9e-16
Identities = 138/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || || || || ||||| || || | || |||||||| |||
Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| ||||| | ||| |||||||||||| | || ||||||||
Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
|| ||| | || |||||||| ||||| | ||||| | | | || | | ||||||||
Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGA-TGGACGTACATTATCTGATTATAA 3542197
Query 31372 CATTCAAAAAG 31382
|| |||||||
Sbjct 3542196 TATCCAAAAAG 3542186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445762828296720
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