Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq442 232 6e-56 seq444 152 5e-32 >seq442 Length=7801961 Score = 232 bits (256), Expect = 6e-56 Identities = 934/1466 (64%), Gaps = 26/1466 (2%) Strand=Plus/Plus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 |||| || || ||||| || || || ||||| || ||||| | || | || ||||||| Sbjct 3251594 TCTTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGC 3251653 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| || || | || ||| | || ||||| ||||| |||| ||| || | | Sbjct 3251654 CTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAG 3251713 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | || | | | ||| || || ||||| ||||| ||||| ||||| || || || | Sbjct 3251714 GTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAG 3251773 Query 22284 CCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 |||| | | | || | || |||||||| || || |||| |||| | || Sbjct 3251774 CCATTTCCAGAATATTTTTTTGAGGA-ATTTCCCAAACAGTTCGATACAATTGCTTAATA 3251832 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || || || ||| || || | ||| || | | | || ||| | | | Sbjct 3251833 TCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTC 3251892 Query 22403 ATCGTATCGTTCCACAAACC--GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 || || ||||| | | ||| | |||||||||||||| ||||| |||| || | Sbjct 3251893 ATGTCTTCATTCCAAAGTTCTCGAT--CAGTCAAATCTTTGACAAGATGGTGGTTAACTA 3251950 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 ||||||| || || || | || || || || ||||| ||| | ||||| | || Sbjct 3251951 CTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAG 3252010 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 |||| ||||| |||| |||||||| || || || || ||||| ||||| || | || Sbjct 3252011 ATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGAC 3252070 Query 22581 AGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 ||||| | || || || | |||||||||||| ||| | |||||||||||||| | Sbjct 3252071 TGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAG 3252130 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700 | || || ||| |||||||||| |||||||| | || | || || ||| Sbjct 3252131 ATGGTGTTACA---CCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTG 3252187 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 | || |||||||| || || | | || || || || || || || | || || | Sbjct 3252188 CATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCAT 3252247 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 |||| || ||||| ||||||| ||||||| || | ||| || | || | Sbjct 3252248 AATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAATGG-A 3252306 Query 22821 TA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || | ||| | | || ||||| || | || ||||| |||| || || ||||| || Sbjct 3252307 TATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTC 3252366 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || || || || | |||||| | || || || || |||| Sbjct 3252367 TTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGTTT 3252426 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 || |||| || || ||| || | |||| || ||| | Sbjct 3252427 AAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATC--AAA----TTTT 3252480 Query 23000 TGTAC------AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053 ||| | |||||| || || | ||| || ||||||||||| || || || || || Sbjct 3252481 TGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCA 3252540 Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113 || || | || || |||||||| || || ||||| |||||| || || || | | Sbjct 3252541 TCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGA 3252600 Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173 || |||| ||| ||| ||| || ||| || || ||||| ||||| || || Sbjct 3252601 TTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTT 3252660 Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC 23233 || | ||| | || ||||| ||| |||| | || |||| | | | | ||| Sbjct 3252661 TCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTAT 3252720 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 || |||||| || || || || | | | ||||| | || ||| ||| Sbjct 3252721 CTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATCTCCATAAACTTCGAAT 3252780 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 || || || ||| |||||||| |||||||||||| || |||| ||| || | Sbjct 3252781 AGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCC 3252840 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 |||||||||| || | ||| ||||| | |||| || || || | || ||| ||||| Sbjct 3252841 ATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTA 3252900 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || ||||| ||| | || | || || || || || |||||||| ||||| | ||| Sbjct 3252901 CCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAA 3252960 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||| | || || |||| ||| || || || | ||| ||||| || | | || Sbjct 3252961 ATAGCATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAGCAGATTCATTA 3253017 Query 23534 TACACTCTTAGCATCGGCACGAGACC 23559 ||| | | ||||| ||||||||||| Sbjct 3253018 AACATTTTCAGCATAGGCACGAGACC 3253043 >seq444 Length=5217058 Score = 152 bits (168), Expect = 5e-32 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| |||||||| || || ||||| |||||| | || |||||||| || Sbjct 3542604 CATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATC 3542545 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || ||| | || ||||||||||| | || ||||| || Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| | || |||||||| |||||| | ||||| | | | || |||||||||| | Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGA-TGGACGTACCCTGAGCGATTACA 3542426 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTA-GACTGAGGGGCGGTA 31421 ||||||||||||| || || ||||| |||| |||| |||| | || |||| Sbjct 3542425 ACATTCAAAAAGAGTCTACCCTTCACTTGGT-CTTACGACTTCGTGGTGGTA 3542375 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| ||||| || || || || || || | || |||||||| || Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| |||||| | || ||| | ||| | || |||||||| Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || ||||| |||| Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGT 3541819 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| |||||| | || |||||||| ||| Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||||||||||| | || || || || Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| |||||| | || || | || | || || ||| Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| |||||||| ||| | ||| | ||| | |||| Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACT 3541582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || || | || |||||||| ||| Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| ||||| | ||| |||||||||||| | || |||||||| Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || ||| | || |||||||| ||||| | ||||| | | | || | | |||||||| Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGA-TGGACGTACATTATCTGATTATAA 3542197 Query 31372 CATTCAAAAAG 31382 || ||||||| Sbjct 3542196 TATCCAAAAAG 3542186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762828296720