Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq442 594 6e-165
seq468 266 4e-66
seq453 266 4e-66
>seq442
Length=7801961
Score = 594 bits (658), Expect = 6e-165
Identities = 1232/1813 (68%), Gaps = 37/1813 (2%)
Strand=Plus/Plus
Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126
|| ||||| | |||| |||||||| || || || || || || ||| || || |||
Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685
Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186
||||| || | ||| | | | || | | | ||| ||||| | ||||||||||
Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745
Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246
||||| || || ||||| | || |||||||||| | || | ||||| | |||||||
Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805
Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGAT 62303
|||| |||| ||| | | |||||||||| ||||| | | | | ||||||||
Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865
Query 62304 CCACCATCTACCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362
|| | | |||||| | |||| | || || |||||||| | || || || || ||
Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924
Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422
| || | | ||||| ||||||||||||| ||||| ||||| | |||| ||||| ||
Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984
Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482
|| ||||| ||||| ||||| | || || || || |||||||| ||||||||||||||
Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044
Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62540
|| ||||| || || | || | ||| |||| |||||| ||||| | ||||||
Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102
Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600
|| || | | ||| | ||| |||| || ||| ||| |||||| | |
Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162
Query 62601 ATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGT 62660
|| || ||| ||| |||||| |||| || || || ||||| | ||||| ||
Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222
Query 62661 TTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCT 62720
| |||||| || || | || || ||||| || || |||||||| | ||| | |
Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282
Query 62721 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62780
| ||||| ||||| ||||||||||| | | | || ||| ||||| ||||| ||||||
Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342
Query 62781 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 62839
|| || | || ||||||| || | || || || || || |||| | ||||||
Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401
Query 62840 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62896
| | || || || |||||||| || | ||||| |||| ||||| || || ||
Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458
Query 62897 CAGTTTGAGAAAATCAAATC---GCCCATCTATTACAAACATGTTCAATGCAACAGATGC 62953
||| | |||||||||| | | || | ||||| | ||||| || | ||| ||
Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518
Query 62954 CAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 63013
|||||||| || || || |||| || | ||||| | || |||||||| |||||
Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578
Query 63014 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63073
||||||||| ||||| | ||||| ||||| ||||| ||||| ||| |||||
Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638
Query 63074 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63133
||| || | ||| ||||||||| ||||| | || || || |||| ||| | ||||
Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698
Query 63134 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT-TCGA 63192
||| |||||| |||||||| ||||| ||| ||| | ||| || | | | ||
Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757
Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACT 63252
| || ||||| |||| | | | | |||||||| | |||||||| | ||||
Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817
Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312
| | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | ||
Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877
Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 63370
||| | ||| || || || || || || ||| ||||| || ||||| | | |
Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935
Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 63429
||||| |||||| || || | || || || |||| |||| || ||||| || || |
Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991
Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489
| | | || | ||| | | |||| | | | ||| ||| || | | ||| | || |
Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051
Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACC 63547
|||||| || || ||| | ||| | || |||||| | || |||| ||||
Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607
||||| || || |||||| || || || ||| || || || | || |||||
Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169
Query 63608 TATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
|| ||||| || |||| | ||| |||||||| ||||| | || | |||| || |
Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726
| |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| |
Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288
Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786
||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| |
Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348
Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846
| || || |||||||| | ||| || ||||| | | ||| ||| ||||||| ||||
Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408
Query 63847 TAAAACCAAAATA 63859
| |||||||||||
Sbjct 3253409 TGAAACCAAAATA 3253421
>seq468
Length=1118636
Score = 266 bits (294), Expect = 4e-66
Identities = 533/781 (68%), Gaps = 7/781 (1%)
Strand=Plus/Plus
Query 33399 AATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458
|||||| | |||||| ||||| || || || || ||| |||||||| |||
Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155
Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518
||||||||||| |||||| | ||| | || | ||||| || || || || |||
Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215
Query 33519 TTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACAT 33577
| | | || | || ||| |||||||||| | ||| || || |||||| |
Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTT-TAACAACATATTTAAATAA 1106274
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|||||| || ||||| || || | || || |||| | || | ||||||||| || ||
Sbjct 1106275 CAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGT 1106334
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
| || ||||| ||||||||||||||||||||||| || | ||||| || || || ||
Sbjct 1106335 TAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAA 1106394
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT 33756
||||| ||||| || ||||||||||| | ||| || || || | | | || |
Sbjct 1106395 AAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATT 1106454
Query 33757 -GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
| | |||| ||| ||||| || ||||| | ||||| || | ||||| || ||
Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| || ||| | | | | | ||| | | ||||| || |||| || || ||
Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 1106574
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| || || || | || ||||| || || ||||| || || ||||||| ||| |||||
Sbjct 1106575 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 1106634
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|||||| | || | ||||| ||| |||||||||||||| || || || || |||
Sbjct 1106635 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 1106694
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCC 34053
| || || ||||| |||| | ||||||| ||| || | || | || ||| ||
Sbjct 1106695 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCC 1106753
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| ||| | | |||| ||||| || || ||||| || ||||| || || || || || |
Sbjct 1106754 AGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTT 1106813
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173
| |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| ||||
Sbjct 1106814 TCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGAT 1106873
Query 34174 T 34174
|
Sbjct 1106874 T 1106874
>seq453
Length=2394413
Score = 266 bits (294), Expect = 4e-66
Identities = 533/781 (68%), Gaps = 7/781 (1%)
Strand=Plus/Plus
Query 33399 AATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458
|||||| | |||||| ||||| || || || || ||| |||||||| |||
Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607
Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518
||||||||||| |||||| | ||| | || | ||||| || || || || |||
Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667
Query 33519 TTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACAT 33577
| | | || | || ||| |||||||||| | ||| || || |||||| |
Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTT-TAACAACATATTTAAATAA 11726
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|||||| || ||||| || || | || || |||| | || | ||||||||| || ||
Sbjct 11727 CAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGT 11786
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
| || ||||| ||||||||||||||||||||||| || | ||||| || || || ||
Sbjct 11787 TAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAA 11846
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT 33756
||||| ||||| || ||||||||||| | ||| || || || | | | || |
Sbjct 11847 AAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATT 11906
Query 33757 -GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
| | |||| ||| ||||| || ||||| | ||||| || | ||||| || ||
Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| || ||| | | | | | ||| | | ||||| || |||| || || ||
Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 12026
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| || || || | || ||||| || || ||||| || || ||||||| ||| |||||
Sbjct 12027 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 12086
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|||||| | || | ||||| ||| |||||||||||||| || || || || |||
Sbjct 12087 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 12146
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCC 34053
| || || ||||| |||| | ||||||| ||| || | || | || ||| ||
Sbjct 12147 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCC 12205
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| ||| | | |||| ||||| || || ||||| || ||||| || || || || || |
Sbjct 12206 AGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTT 12265
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173
| |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| ||||
Sbjct 12266 TCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGAT 12325
Query 34174 T 34174
|
Sbjct 12326 T 12326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629812553586480
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