Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq442 594 6e-165 seq468 266 4e-66 seq453 266 4e-66 >seq442 Length=7801961 Score = 594 bits (658), Expect = 6e-165 Identities = 1232/1813 (68%), Gaps = 37/1813 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| | |||| |||||||| || || || || || || ||| || || ||| Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| || | ||| | | | || | | | ||| ||||| | |||||||||| Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || ||||| | || |||||||||| | || | ||||| | ||||||| Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGAT 62303 |||| |||| ||| | | |||||||||| ||||| | | | | |||||||| Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865 Query 62304 CCACCATCTACCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 || | | |||||| | |||| | || || |||||||| | || || || || || Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | || | | ||||| ||||||||||||| ||||| ||||| | |||| ||||| || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || ||||| ||||| ||||| | || || || || |||||||| |||||||||||||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62540 || ||||| || || | || | ||| |||| |||||| ||||| | |||||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 || || | | ||| | ||| |||| || ||| ||| |||||| | | Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162 Query 62601 ATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGT 62660 || || ||| ||| |||||| |||| || || || ||||| | ||||| || Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222 Query 62661 TTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCT 62720 | |||||| || || | || || ||||| || || |||||||| | ||| | | Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282 Query 62721 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62780 | ||||| ||||| ||||||||||| | | | || ||| ||||| ||||| |||||| Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342 Query 62781 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 62839 || || | || ||||||| || | || || || || || |||| | |||||| Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401 Query 62840 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62896 | | || || || |||||||| || | ||||| |||| ||||| || || || Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458 Query 62897 CAGTTTGAGAAAATCAAATC---GCCCATCTATTACAAACATGTTCAATGCAACAGATGC 62953 ||| | |||||||||| | | || | ||||| | ||||| || | ||| || Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518 Query 62954 CAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 63013 |||||||| || || || |||| || | ||||| | || |||||||| ||||| Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578 Query 63014 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63073 ||||||||| ||||| | ||||| ||||| ||||| ||||| ||| ||||| Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638 Query 63074 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63133 ||| || | ||| ||||||||| ||||| | || || || |||| ||| | |||| Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698 Query 63134 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT-TCGA 63192 ||| |||||| |||||||| ||||| ||| ||| | ||| || | | | || Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757 Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACT 63252 | || ||||| |||| | | | | |||||||| | |||||||| | |||| Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 | | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | || Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 63370 ||| | ||| || || || || || || ||| ||||| || ||||| | | | Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935 Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 63429 ||||| |||||| || || | || || || |||| |||| || ||||| || || | Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 | | | || | ||| | | |||| | | | ||| ||| || | | ||| | || | Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACC 63547 |||||| || || ||| | ||| | || |||||| | || |||| |||| Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 ||||| || || |||||| || || || ||| || || || | || ||||| Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169 Query 63608 TATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 || ||||| || |||| | ||| |||||||| ||||| | || | |||| || | Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| | Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 ||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| | Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 | || || |||||||| | ||| || ||||| | | ||| ||| ||||||| |||| Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408 Query 63847 TAAAACCAAAATA 63859 | ||||||||||| Sbjct 3253409 TGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 266 bits (294), Expect = 4e-66 Identities = 533/781 (68%), Gaps = 7/781 (1%) Strand=Plus/Plus Query 33399 AATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458 |||||| | |||||| ||||| || || || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518 ||||||||||| |||||| | ||| | || | ||||| || || || || ||| Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 33519 TTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACAT 33577 | | | || | || ||| |||||||||| | ||| || || |||||| | Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTT-TAACAACATATTTAAATAA 1106274 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| || ||||| || || | || || |||| | || | ||||||||| || || Sbjct 1106275 CAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGT 1106334 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| ||||||||||||||||||||||| || | ||||| || || || || Sbjct 1106335 TAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAA 1106394 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT 33756 ||||| ||||| || ||||||||||| | ||| || || || | | | || | Sbjct 1106395 AAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATT 1106454 Query 33757 -GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || ||| | | | | | ||| | | ||||| || |||| || || || Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 1106574 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || || || | || ||||| || || ||||| || || ||||||| ||| ||||| Sbjct 1106575 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 1106634 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | || | ||||| ||| |||||||||||||| || || || || ||| Sbjct 1106635 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 1106694 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCC 34053 | || || ||||| |||| | ||||||| ||| || | || | || ||| || Sbjct 1106695 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCC 1106753 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | ||| | | |||| ||||| || || ||||| || ||||| || || || || || | Sbjct 1106754 AGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTT 1106813 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| |||| Sbjct 1106814 TCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGAT 1106873 Query 34174 T 34174 | Sbjct 1106874 T 1106874 >seq453 Length=2394413 Score = 266 bits (294), Expect = 4e-66 Identities = 533/781 (68%), Gaps = 7/781 (1%) Strand=Plus/Plus Query 33399 AATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458 |||||| | |||||| ||||| || || || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518 ||||||||||| |||||| | ||| | || | ||||| || || || || ||| Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 33519 TTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACAT 33577 | | | || | || ||| |||||||||| | ||| || || |||||| | Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTT-TAACAACATATTTAAATAA 11726 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| || ||||| || || | || || |||| | || | ||||||||| || || Sbjct 11727 CAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGT 11786 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| ||||||||||||||||||||||| || | ||||| || || || || Sbjct 11787 TAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAA 11846 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT 33756 ||||| ||||| || ||||||||||| | ||| || || || | | | || | Sbjct 11847 AAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATT 11906 Query 33757 -GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || ||| | | | | | ||| | | ||||| || |||| || || || Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 12026 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || || || | || ||||| || || ||||| || || ||||||| ||| ||||| Sbjct 12027 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 12086 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | || | ||||| ||| |||||||||||||| || || || || ||| Sbjct 12087 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 12146 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCC 34053 | || || ||||| |||| | ||||||| ||| || | || | || ||| || Sbjct 12147 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCC 12205 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | ||| | | |||| ||||| || || ||||| || ||||| || || || || || | Sbjct 12206 AGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTT 12265 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| |||| Sbjct 12266 TCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGAT 12325 Query 34174 T 34174 | Sbjct 12326 T 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812553586480